Rothia dentocariosa (CCUG 38132)

Name: Rothia dentocariosa (CCUG 38132)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 149654

Type strain

Culture col. no. CCUG 38132

NCBI tax ID(s) 2047

Special Collections CCUG

Links

Rothia dentocariosa CCUG 38132 is a bacterium that was isolated from Human pleural fluid.

Bacteria

Name and taxonomic classification

SI-ID 56737

CCUG 38132

@ref 20215

Last LPSN update 2026-02-09 11:36:13

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Micrococcaceae

Genus Rothia

Species Rothia dentocariosa

Full scientific name Rothia dentocariosa corrig. (Onishi 1949) Georg and Brown 1967 (Approved Lists 1980)

Synonyms (3)

"Nocardia dentocariosus"
Rothia dentocariosus
"Actinomyces dentocariosus"

BacDive ID	Other strains from **Rothia dentocariosa** (38)	Type strain
7779	R. dentocariosa XDIA, X599, DSM 43762, ATCC 17931, DSM 46363, ... (type strain)
103160	R. dentocariosa STI10083(IMET),
103161	R. dentocariosa SF002737(FSU),
103162	R. dentocariosa SF002748(FSU),
138734	R. dentocariosa CIP 102480
143220	R. dentocariosa CCUG 17835
145026	R. dentocariosa CCUG 27465
145121	R. dentocariosa CCUG 27698
145454	R. dentocariosa CCUG 28582
145458	R. dentocariosa CCUG 28595
145961	R. dentocariosa CCUG 29965
145980	R. dentocariosa CCUG 30072
146267	R. dentocariosa CCUG 30754
146425	R. dentocariosa CCUG 31109
146918	R. dentocariosa CCUG 32449
147410	R. dentocariosa CCUG 33543
147679	R. dentocariosa CCUG 33996
148200	R. dentocariosa CCUG 35025
149424	R. dentocariosa CCUG 37703
149463	R. dentocariosa CCUG 37790
149661	R. dentocariosa CCUG 38139
149665	R. dentocariosa CCUG 38143
150128	R. dentocariosa CCUG 39054
151025	R. dentocariosa CCUG 43070
151094	R. dentocariosa CCUG 43254
151236	R. dentocariosa CCUG 43520 C
152446	R. dentocariosa CCUG 46804
153179	R. dentocariosa CCUG 48652, ATCC BAA-907
153237	R. dentocariosa CCUG 48843
153488	R. dentocariosa CCUG 49729
153570	R. dentocariosa CCUG 50219
153766	R. dentocariosa CCUG 50895
154483	R. dentocariosa CCUG 53793
154915	R. dentocariosa CCUG 55681
155471	R. dentocariosa CCUG 57823
155890	R. dentocariosa CCUG 59569
163858	R. dentocariosa JCM 3068, ATCC 14189, IAM 14774, IFM 1285, ...
174789	R. dentocariosa SB-286a1, DSM 112005

Morphology

Culture and growth conditions

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68379	17634 ChEBI	D-glucose	+	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	+	hydrolysis	from API Coryne
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	+	fermentation	from API Coryne
68379	17632 ChEBI	nitrate	+	reduction	from API Coryne
68379	17992 ChEBI	sucrose	+	fermentation	from API Coryne
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	+	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68379	catalase	-	1.11.1.6	from API Coryne
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68379	gelatinase	-		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68379	pyrazinamidase	+	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	+	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68379	urease	-	3.5.1.5	from API Coryne
68382	valine arylamidase	+		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	enterobactin biosynthesis	100	3 of 3
66794	vitamin K metabolism	100	5 of 5
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	adipate degradation	100	2 of 2
66794	acetate fermentation	100	4 of 4
66794	acetoin degradation	100	3 of 3
66794	palmitate biosynthesis	100	22 of 22
66794	methylglyoxal degradation	100	5 of 5
66794	formaldehyde oxidation	100	3 of 3
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	teichoic acid biosynthesis	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	denitrification	100	2 of 2
66794	chorismate metabolism	88.89	8 of 9
66794	heme metabolism	85.71	12 of 14
66794	pentose phosphate pathway	81.82	9 of 11
66794	peptidoglycan biosynthesis	80	12 of 15
66794	threonine metabolism	80	8 of 10
66794	cellulose degradation	80	4 of 5
66794	photosynthesis	78.57	11 of 14
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	valine metabolism	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	phenylalanine metabolism	76.92	10 of 13
66794	isoleucine metabolism	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	flavin biosynthesis	73.33	11 of 15
66794	glycolysis	70.59	12 of 17
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	NAD metabolism	66.67	12 of 18
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	alanine metabolism	65.52	19 of 29
66794	tetrahydrofolate metabolism	64.29	9 of 14
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	gluconeogenesis	62.5	5 of 8
66794	leucine metabolism	61.54	8 of 13
66794	vitamin B1 metabolism	61.54	8 of 13
66794	lipoate biosynthesis	60	3 of 5
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	non-pathway related	57.89	22 of 38
66794	methionine metabolism	57.69	15 of 26
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	glutamate and glutamine metabolism	57.14	16 of 28
66794	purine metabolism	56.38	53 of 94
66794	degradation of sugar alcohols	56.25	9 of 16
66794	serine metabolism	55.56	5 of 9
66794	d-mannose degradation	55.56	5 of 9
66794	cysteine metabolism	55.56	10 of 18
66794	proline metabolism	54.55	6 of 11
66794	pyrimidine metabolism	53.33	24 of 45
66794	oxidative phosphorylation	51.65	47 of 91
66794	sulfopterin metabolism	50	2 of 4
66794	ketogluconate metabolism	50	4 of 8
66794	ethanol fermentation	50	1 of 2
66794	CMP-KDO biosynthesis	50	2 of 4
66794	butanoate fermentation	50	2 of 4
66794	vitamin E metabolism	50	2 of 4
66794	suberin monomers biosynthesis	50	1 of 2
66794	starch degradation	50	5 of 10
66794	glutathione metabolism	50	7 of 14
66794	phenylmercury acetate degradation	50	1 of 2
66794	Entner Doudoroff pathway	50	5 of 10
66794	lipid metabolism	48.39	15 of 31
66794	metabolism of disaccharids	45.45	5 of 11
66794	lysine metabolism	45.24	19 of 42
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	citric acid cycle	42.86	6 of 14
66794	propanol degradation	42.86	3 of 7
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	tryptophan metabolism	42.11	16 of 38
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	glycine betaine biosynthesis	40	2 of 5
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	arginine metabolism	37.5	9 of 24
66794	tyrosine metabolism	35.71	5 of 14
66794	bile acid biosynthesis, neutral pathway	35.29	6 of 17
66794	histidine metabolism	34.48	10 of 29
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	degradation of hexoses	33.33	6 of 18
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	pantothenate biosynthesis	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	myo-inositol biosynthesis	30	3 of 10
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	d-xylose degradation	27.27	3 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	vitamin B6 metabolism	27.27	3 of 11
66794	ascorbate metabolism	27.27	6 of 22
66794	toluene degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	androgen and estrogen metabolism	25	4 of 16
66794	biotin biosynthesis	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	urea cycle	23.08	3 of 13
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	nitrate assimilation	22.22	2 of 9
66794	degradation of pentoses	21.43	6 of 28

Fatty acid profile

Metadata FA analysis

@ref

54088

Fatty acid	Percentage	ECL
C15:0 ANTEISO	29.7	14.711
C17:0 anteiso	26.8	16.722
C16:0	15.8	16
C16:0 iso	13.4	15.626
C18:2 ω6,9c/C18:0 ANTE	3.7	17.724
C18:1 ω9c	2.7	17.769
C15:0 ISO	2.2	14.621
C17:0 iso	1.7	16.629
C18:0	1.2	18
C14:0	1	14
C14:0 ISO	0.8	13.618
C15:0	0.6	15
C16:1 ω7c	0.5	15.819

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
54088	+	+	+	-	-	-	+	-	+	-	-	-	+	-	-	-	+	-	+	-	-

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
54088	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Oral cavity and Airways	#Pleural fluid
#Infection	#Patient	-
#Host Body-Site	#Oral cavity and airways	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
54088	Human pleural fluid	1997-06-01	Stockholm	Sweden	SWE	Europe

Interaction and safety

Sequence information

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#54088	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 38132
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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