Name: Rothia dentocariosa JCM 3068
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 163858

Type strain:

Species: Rothia dentocariosa

Culture col. no.: JCM 3068, ATCC 14189, IAM 14774, IFM 1285, IFO 12532, NBRC 12532, NCTC 10918, PCM 2348

Strain history: KCC A-0068 <-- L. K. Georg X346 <-- G. D. Roth 24.2A.

NCBI tax ID(s): 2047 (species)

SI-ID 35990

ATCC 14189, JCM 3068, IFO 12532, NCTC 10918, NBRC 12532, IAM 14774

Other strains from Rothia dentocariosa

Section

Rothia dentocariosa JCM 3068 is a mesophilic, Gram-positive bacterium that was isolated from Carious teeth.

Gram-positive
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Rothia*
	Species	**Rothia dentocariosa**
	Full Scientific Name (LPSN)	Rothia dentocariosa corrig. (Onishi 1949) Georg and Brown 1967 (Approved Lists 1980)

	Synonym	"Actinomyces* dentocariosus"*
	Synonym	Rothia dentocariosus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %96.132

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Carious teeth
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rothia dentocariosa NCTC10918	GCA_900638535	complete	GenBank	2047 tax ID	*
[Ref.: #66792]	Rothia dentocariosa strain NCTC10918	2047.140	complete	PATRIC	2047 tax ID	*

[Ref.: #67770]

GC-content

65.6 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rothia dentocariosa strain NCTC10918 PATRIC: 2047.140
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rothia dentocariosa NCTC10918 NCBI: GCA_900638535.1
[Ref.: #69480]	flagellated	no	97.279	no
[Ref.: #69480]	gram-positive	yes	95.815	no
[Ref.: #69480]	anaerobic	no	98.929	no
[Ref.: #69480]	aerobic	no	65.543	no
[Ref.: #69480]	halophile	yes	61.898	no
[Ref.: #69480]	spore-forming	no	91.789	no
[Ref.: #69480]	thermophile	no	97.778	yes
[Ref.: #69480]	glucose-util	yes	83.682	no
[Ref.: #69480]	motile	no	94.06	no
[Ref.: #69480]	glucose-ferment	no	57.797	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 3068, ATCC 14189, IAM 14774, IFM 1285, IFO 12532, NBRC 12532, NCTC 10918, PCM 2348

[Ref.: #114142]

SI-ID 35990

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Rothia dentocariosa induces TNF-alpha production in a TLR2-dependent manner.	Kataoka H, Taniguchi M, Fukamachi H, Arimoto T, Morisaki H, Kuwata H	Pathog Dis	10.1111/2049-632X.12115	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#114142

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID35990.1 )

* These data were automatically processed and therefore are not curated

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Rothia dentocariosa strain NCTC10918

Rothia dentocariosa NCTC10918

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