Rothia dentocariosa CDC X599 | Type strain | DSM 43762, ATCC 17931, DSM 46363, IFO 12531, JCM 3067, KCC A-0067, NBRC 12531

Strain identifier

BacDive ID: 7779

Type strain:

Species: Rothia dentocariosa

Strain Designation: CDC X599

Culture col. no.: DSM 43762, ATCC 17931, DSM 46363, IFO 12531, JCM 3067, KCC A-0067, NBRC 12531

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #11181]	Domain	Bacteria
[Ref.: #11181]	Phylum	Actinobacteria
[Ref.: #11181]	Class	Actinobacteria
[Ref.: #11181]	Order	Actinomycetales
[Ref.: #11181]	Family	Micrococcaceae
[Ref.: #11181]	Genus	Rothia
[Ref.: #11181]	Species	Rothia dentocariosa
[Ref.: #11181]	Full Scientific Name	Rothia dentocariosa (Onishi 1949) Georg and Brown 1967 emend. Daneshvar et al. 2004
[Ref.: #11181]	Strain Designation	CDC X599
[Ref.: #11181]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Actinobacteria
[Ref.: #20215]	Class	Actinobacteria		Int. J. Syst. Bacteriol. 47:483*
[Ref.: #20215]	Family	Micrococcaceae		Int. J. Syst. Bacteriol. 30:236
[Ref.: #20215]	Genus	Rothia	genus (AL)	Int. J. Syst. Bacteriol. 30:359 (AL)
[Ref.: #20215]	Species	Rothia dentocariosa	species (AL)	Int. J. Syst. Bacteriol. 30:359 (AL)
[Ref.: #20215]	Full Scientific Name	Rothia dentocariosa (Onishi 1949) Georg and Brown 1967 emend. Daneshvar et al. 2004

Information on morphological and physiological propertiesMorphology and physiology

[Ref.: #19951]	Colony color	Cream (9001)
[Ref.: #19951]	Incubation period	10-14 days
[Ref.: #19951]	Cultivation medium used	5006

[Ref.: #19951]	Colony color	Cream (9001)
[Ref.: #19951]	Incubation period	10-14 days
[Ref.: #19951]	Cultivation medium used	5425

[Ref.: #19951]	Colony color	Cream (9001)
[Ref.: #19951]	Incubation period	10-14 days
[Ref.: #19951]	Cultivation medium used	5530

[Ref.: #19951]	Colony color	Cream (9001)
[Ref.: #19951]	Incubation period	10-14 days
[Ref.: #19951]	Cultivation medium used	ISP 2

[Ref.: #19951]	Colony color	Cream (9001)
[Ref.: #19951]	Incubation period	10-14 days
[Ref.: #19951]	Cultivation medium used	ISP 5

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19951]	557	-	-	-	-	-	-	-	-	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #19951]	375	+	-	+	-	-	-	+	-	+	-	-	not determinedn.d.	+	-	-	-	+	-	+	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19951]	753	not determinedn.d.	-	-	+	-	+	+	+	+	+	+	+	-	-	+	+	+	-	-	-

[Ref.: #19951]	Multicellular complex forming ability	no
[Ref.: #19951]	Medium Name (multicellularity)	ISP 2

[Ref.: #19951]	Multicellular complex forming ability	no
[Ref.: #19951]	Medium Name (multicellularity)	5006

[Ref.: #19951]	Multicellular complex forming ability	no
[Ref.: #19951]	Medium Name (multicellularity)	5245

[Ref.: #19951]	Multicellular complex forming ability	no
[Ref.: #19951]	Medium Name (multicellularity)	5530

[Ref.: #19951]	Multicellular complex forming ability	no
[Ref.: #19951]	Medium Name (multicellularity)	ISP 5

[Ref.: #11181]

Oxygen tolerance

anaerobe

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #11181]

Culture medium

BHI/1 MEDIUM (DSMZ Medium 216), 37°C, anaerobic

[Ref.: #11181]

Culture medium growth

[Ref.: #11181]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #19951]

Culture medium

ISP 2

[Ref.: #19951]

Culture medium growth

[Ref.: #19951]

Culture medium composition

expand / minimize

[Ref.: #19951]

Culture medium

5006

[Ref.: #19951]

Culture medium growth

[Ref.: #19951]

Culture medium composition

expand / minimize

[Ref.: #19951]

Culture medium

5425

[Ref.: #19951]

Culture medium growth

[Ref.: #19951]

Culture medium composition

expand / minimize

[Ref.: #19951]

Culture medium

5530

[Ref.: #19951]

Culture medium growth

[Ref.: #19951]

Culture medium

ISP 5

[Ref.: #19951]

Culture medium growth

[Ref.: #19951]

Culture medium composition

expand / minimize

[Ref.: #38801]

Culture medium

MEDIUM 4 - Columbia agar with 20 % sterile defibrinated horse serum

[Ref.: #38801]

Culture medium growth

[Ref.: #38801]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #11181]	growth	37 ̊C
[Ref.: #19951]	optimum	37 ̊C
[Ref.: #38801]	growth	37 ̊C

[Ref.: #11181]	Temperature range	mesophilic
[Ref.: #19951]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #11181]

Sample type/isolated from

carious teeth

Isolation sources categories

#Host Body-Site

#Oral cavity and airways

#Tooth

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #11181]	Biosafety level	2	Risk group (German classification)
[Ref.: #19951]	Biosafety level	2	German classification

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Rothia dentocariosa ATCC 17931 contig00004, whole genome shotgun sequence	ADVO01000001	88515	762948	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Rothia dentocariosa ATCC 17931 contig00005, whole genome shotgun sequence	ADVO01000002	221996	762948	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Rothia dentocariosa ATCC 17931 contig00006, whole genome shotgun sequence	ADVO01000003	8522	762948	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Rothia dentocariosa ATCC 17931 contig00007, whole genome shotgun sequence	ADVO01000004	25960	762948	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Rothia dentocariosa ATCC 17931 contig00008, whole genome shotgun sequence	ADVO01000005	152724	762948	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Rothia dentocariosa ATCC 17931 contig00009, whole genome shotgun sequence	ADVO01000006	89715	762948	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Rothia dentocariosa ATCC 17931 contig00010, whole genome shotgun sequence	ADVO01000007	5431	762948	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Rothia dentocariosa ATCC 17931 contig00011, whole genome shotgun sequence	ADVO01000008	178005	762948	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Rothia dentocariosa ATCC 17931 contig00012, whole genome shotgun sequence	ADVO01000009	532	762948	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Rothia dentocariosa ATCC 17931 contig00013, whole genome shotgun sequence	ADVO01000010	1762	762948	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Rothia dentocariosa ATCC 17931 contig00032, whole genome shotgun sequence	ADVO01000011	537	762948	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Rothia dentocariosa ATCC 17931 contig00059, whole genome shotgun sequence	ADVO01000012	92806	762948	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Rothia dentocariosa ATCC 17931 contig00060, whole genome shotgun sequence	ADVO01000013	2497	762948	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Rothia dentocariosa ATCC 17931 contig00061, whole genome shotgun sequence	ADVO01000014	7956	762948	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Rothia dentocariosa ATCC 17931 contig00062, whole genome shotgun sequence	ADVO01000015	283817	762948	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Rothia dentocariosa ATCC 17931 contig00063, whole genome shotgun sequence	ADVO01000016	196585	762948	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Rothia dentocariosa ATCC 17931 contig00064, whole genome shotgun sequence	ADVO01000017	13473	762948	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Rothia dentocariosa ATCC 17931 contig00065, whole genome shotgun sequence	ADVO01000018	903165	762948	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Rothia dentocariosa ATCC 17931 contig00066, whole genome shotgun sequence	ADVO01000019	950	762948	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Rothia dentocariosa ATCC 17931 contig00069, whole genome shotgun sequence	ADVO01000020	207613	762948	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Rothia dentocariosa ATCC 17931 contig00070, whole genome shotgun sequence	ADVO01000021	2627	762948	*
[Ref.: #20218]	GenBank Genome project data	Rothia dentocariosa ATCC 17931, complete genome	CP002280	2506025	762948	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	TPA: Rothia dentocariosa ATCC 17931 transfer-messenger mRNA Rothi_dento_17931, single chain mature transcript	HG782813	374	762948	*
[Ref.: #20218]	INSDC Sequence	Rothia dentocariosa ATCC 17931 16S ribosomal RNA gene, partial sequence	M59055	1475	762948	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Staphylococcus lentus DNA, mva genes region, strain: ATCC 29070	AB546859	17859	42858	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Staphylococcus lentus ATCC 29070 heat shock protein 60 gene, partial cds	AF053586	494	42858	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Staphylococcus lentus partial sodA gene for superoxide dismutase, strain CIP 8163 T	AJ343916	432	42858	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Sequence 76 from Patent WO0188186	AX354265	432	42858	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Staphylococcus lentus glyceraldehyde-3-phosphate dehydrogenase (gap) gene, partial cds	DQ321692	931	42858	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Staphylococcus lentus strain DSM 20352 16S ribosomal RNA gene, partial sequence	AY688073	465	42858	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Staphylococcus lentus strain DSM20352 catalase (katA) gene, partial cds	EU259844	920	42858	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Staphylococcus lentus dnaJ gene for dnaJ protein, partial cds	AB234080	883	42858	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Rothia dentocariosa tuf gene for elongation factor Tu, partial cds, strain: JCM 3067	AB472821	771	2047	*

Availability in culture collectionsStrain availability

[Ref.: #11181]

Culture collection no.

DSM 43762, ATCC 17931, DSM 46363, IFO 12531, JCM 3067, KCC A-0067, NBRC 12531

[Ref.: #11181]

Strain history

<- K.P. Schaal, HIK <- ATCC <- CDC, X599 <- G. D. Roth, XDIA

[Ref.: #20218]

Associated Passport(s) in StrainInfo

168638, 99532, 154707, 168639, 143184, 168640, 333333

References

#11181

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43762

#19951

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38801 ; Curators of the CIP;
* These References are textmined

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