Name: Zymomonas mobilis subsp. pomaceae Z 6
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14291

Type strain:

Species: Zymomonas mobilis subsp. pomaceae

Strain Designation: Z 6

Culture col. no.: DSM 3580, ATCC 29191, IFO 13756, NBRC 13756, NCIB 11199, JCM 10190, CCM 2770, CECT 560, LMG 445, LMG 452, LMG 454, LMG 467, NCIMB 11199, NRRL B-4490

Strain history: IFO 13756 <-- J. De Ley Z-6 <-- J. Swings <-- W. Van Pee.

NCBI tax ID(s): 120044 (subspecies)

SI-ID 6501

LMG 445, ATCC 29191, CCM 2770, CECT 560, DSM 3580, LMG 452, LMG 454, LMG 467, NCIB 11199, NRRL B-4490, IFO 13756, NCIMB 11199, JCM 10190, CCRC 10809, VTT E-89369, NBRC 13756, BCRC 10809, NCIB 11119

Special Collections

DSMZ
JCM

Other strains from Zymomonas mobilis subsp. pomaceae

Section

Zymomonas mobilis subsp. pomaceae Z 6 is an anaerobe, Gram-negative bacterium that produces alcohol and was isolated from fermenting palm sap.

alcohol production
Gram-negative
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Zymomonadaceae*
	Genus	*Zymomonas*
	Species	**Zymomonas mobilis subsp. pomaceae**
	Full Scientific Name (LPSN)	Zymomonas mobilis subsp. pomaceae (Millis 1956) De Ley and Swings 1976 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %96.048

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1408]

Culture medium

ZYMOMONAS MEDIUM (DSMZ Medium 10)

[Ref.: #1408]

Culture medium growth

[Ref.: #1408]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1408]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1408]			growth	30 °C
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1408]

Oxygen tolerance

anaerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %91.966
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #1408]	Name of produced compound	ethanol
[Ref.: #1408]	Name of produced compound	levan

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1408]	Sample type/isolated from	fermenting palm sap

[Ref.: #67770]	Sample type/isolated from	Fermenting palm sap (Elaeis sp.)
[Ref.: #67770]	Host species	Elaeis sp.
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kinshasa
[Ref.: #67770]	Country	Zaire
[Ref.: #67770]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	-
#Host Body Product	#Plant	#Plant sap (Flux)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC506139 (>99% sequence identity) for Zymomonas mobilis subclade from Microbeatlas

Aquatic Samples	916
Soil Samples	1083
Animal Samples	421
Plant Samples	161
Total Samples	2581

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1408]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Zymomonas mobilis subsp. mobilis JCM 10190 gene for 16S ribosomal RNA, partial sequence	LC506139	1411	GenBank ENA	120045 tax ID
[Ref.: #20218]	Zymomonas mobilis strain ATCC 29191 16S-23S internal transcribed spacer, complete sequence	AF329201	231	GenBank ENA	627344 tax ID	*
[Ref.: #20218]	Zymomonas mobilis subsp. mobilis gene for 16S rRNA, partial sequence, strain: NBRC 13756	AB680510	1414	GenBank ENA	120045 tax ID	*
[Ref.: #20218]	Zymomonas mobilis strain ATCC29191 16S ribosomal RNA gene, partial sequence	AF281034	1452	GenBank ENA	627344 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Zymomonas mobilis subsp. mobilis NBRC 13756	GCA_006539365	contig	GenBank ENA	120045 tax ID
[Ref.: #66792]	Zymomonas mobilis subsp. mobilis ATCC 29191	627344.13	plasmid	PATRIC	627344 tax ID	*
[Ref.: #66792]	Zymomonas mobilis subsp. mobilis ATCC 29191	627344.14	plasmid	PATRIC	627344 tax ID	*
[Ref.: #66792]	Zymomonas mobilis subsp. mobilis ATCC 29191	627344.15	plasmid	PATRIC	627344 tax ID	*
[Ref.: #66792]	Zymomonas mobilis subsp. mobilis ATCC 29191	627344.8	complete	PATRIC	627344 tax ID	*
[Ref.: #66792]	Zymomonas mobilis subsp. mobilis strain NBRC 13756	120045.8	wgs	PATRIC	120045 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Zymomonas mobilis subsp. mobilis ATCC 29191 ATCC 29191 NCBI: GCA_000277755.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Zymomonas mobilis subsp. mobilis ATCC 29191 ATCC 29191 NCBI: GCA_000277755.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.048	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	61.355	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	75.031	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91.966	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.127	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	58.444	no

Availability in culture collections External links

[Ref.: #1408]

Culture collection no.

DSM 3580, ATCC 29191, IFO 13756, NBRC 13756, NCIB 11199, JCM 10190, CCM 2770, CECT 560, LMG 445, LMG 452, LMG 454, LMG 467, NCIMB 11199, NRRL B-4490

[Ref.: #83444]

SI-ID 6501

References

#1408

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3580

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83444

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID6501.1 )

* These data were automatically processed and therefore are not curated

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Zymomonas mobilis subsp. mobilis ATCC 29191 ATCC 29191

Zymomonas mobilis subsp. mobilis ATCC 29191 ATCC 29191

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