Name: Zymomonas mobilis subsp. pomaceae DSM 22645
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14292

Type strain:

Species: Zymomonas mobilis subsp. pomaceae

Culture col. no.: DSM 22645, ATCC 29192, LMG 448, NCIMB 11200, CCUG 17912, Barker I, JCM 10191, CCM 2771, CECT 814, IFO 13757, LMG 449, LMG 453, LMG 464, LMG 465, LMG 466, NBRC 13757, NRRL B-4491

Strain history: IFO 13757 <-- J. De Ley strain Z.an.a <-- J. van der Toorn strain T. H. Delft <-- B. T. P. Baker strain I.

NCBI tax ID(s): 579138 (strain), 120044 (subspecies)

SI-ID 6513

LMG 448, ATCC 29192, CCM 2771, CCUG 17912, LMG 449, LMG 453, LMG 464, LMG 465, LMG 466, NCIB 11200, NRRL B-4491, JCM 10191, IFO 13757, NCIMB 11200, CECT 814, VTT E-82163, NBRC 13757, NRRL B-23393, DSM 22645

Special Collections

Other strains from Zymomonas mobilis subsp. pomaceae

Section

Zymomonas mobilis subsp. pomaceae DSM 22645 is an aerobe, Gram-negative bacterium that was isolated from spoiled ciders.

Gram-negative
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Zymomonadaceae*
	Genus	*Zymomonas*
	Species	**Zymomonas mobilis subsp. pomaceae**
	Full Scientific Name (LPSN)	Zymomonas mobilis subsp. pomaceae (Millis 1956) De Ley and Swings 1976 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %96.048

[Ref.: #46714]

Incubation period

3-6 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16445]

Culture medium

ZYMOMONAS MEDIUM (DSMZ Medium 10)

[Ref.: #16445]

Culture medium growth

[Ref.: #16445]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16445]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16445]	growth	28 °C
[Ref.: #46714]	growth	28 °C
[Ref.: #46714]	growth	30 °C
[Ref.: #67770]	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #46714]

Oxygen tolerance

aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	melibiose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #46714]

Fatty acid	Percentage	ECL
C18:1 ω7c /12t/9t	49.2	17.824
C14:0	18.9	14
C19:0 CYCLO ω8c	9.9	18.9
C16:0	7.2	16
Unidentified	4.5	14.283
C13:0 ISO 2OH	3.3	13.814
Unidentified	2.1	18.141
C16:1 ω7c	1.5	15.819
Unidentified	1.2	16.296
Unidentified	0.8	9.244
Unidentified	0.7	14.135
C12:0	0.7	12

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #16445]	17712	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16445]	Sample type/isolated from	spoiled ciders
[Ref.: #16445]	Continent	Europe

[Ref.: #46714]	Sample type/isolated from	Cider,sick
[Ref.: #46714]	Country	United Kingdom
[Ref.: #46714]	Country ISO 3 Code	GBR
[Ref.: #46714]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Sick cider
[Ref.: #67770]	Country	United Kingdom
[Ref.: #67770]	Country ISO 3 Code	GBR
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Fermented
#Environmental	#Microbial community	-
#Engineered	#Food production	#Beverage

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY670649 (>99% sequence identity) for Zymomonas mobilis subclade from Microbeatlas

Aquatic Samples	9
Soil Samples	6
Animal Samples	7
Plant Samples	6
Total Samples	28

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16445]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16445]	Zymomonas mobilis strain ATCC29192 16S ribosomal RNA gene, partial sequence	AF281032	1452	GenBank ENA	579138 tax ID
[Ref.: #20218]	Zymomonas mobilis strain ATCC 29192 16S-23S internal transcribed spacer, complete sequence	AF329202	231	GenBank ENA	579138 tax ID	*
[Ref.: #124043]	Zymomonas mobilis subsp. pomaceae gene for 16S rRNA, partial sequence, strain: NBRC 13757.	AB680511	1414	GenBank ENA	120044 tax ID	*
[Ref.: #20218]	Zymomonas mobilis subsp. pomaceae strain LMG 448 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence	AY940088	683	GenBank ENA	120044 tax ID	*
[Ref.: #20218]	Zymomonas mobilis subsp. pomaceae strain LMG 448 16S ribosomal RNA gene, partial sequence	AY670649	1343	GenBank ENA	120044 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Zymomonas mobilis subsp. pomaceae NBRC 13757	GCA_006539385	contig	GenBank ENA	120044 tax ID
[Ref.: #66792]	Zymomonas mobilis subsp. pomaceae ATCC 29192	579138.3	complete	PATRIC	579138 tax ID	*
[Ref.: #66792]	Zymomonas mobilis subsp. pomaceae ATCC 29192	579138.9	plasmid	PATRIC	579138 tax ID	*
[Ref.: #66792]	Zymomonas mobilis subsp. pomaceae ATCC 29192	579138.10	plasmid	PATRIC	579138 tax ID	*
[Ref.: #66792]	Zymomonas mobilis subsp. pomaceae strain NBRC 13757	120044.3	wgs	PATRIC	120044 tax ID	*
[Ref.: #66792]	Zymomonas mobilis pomaceae Barker 1, ATCC 29192	650716107	complete	JGI IMG/M	579138 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Zymomonas mobilis subsp. pomaceae ATCC 29192 PATRIC: 579138.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Zymomonas mobilis subsp. pomaceae ATCC 29192 ATCC 29192 NCBI: GCA_000218875.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.048	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	70.403	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	75.038	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.955	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.759	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	57.739	no

Availability in culture collections External links

[Ref.: #16445]

Culture collection no.

DSM 22645, ATCC 29192, LMG 448, NCIMB 11200, CCUG 17912, Barker I, JCM 10191, CCM 2771, CECT 814, IFO 13757, LMG 449, LMG 453, LMG 464, LMG 465, LMG 466, NBRC 13757, NRRL B-4491

[Ref.: #83445]

SI-ID 6513

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome sequence of the ethanol-producing Zymomonas mobilis subsp. pomaceae lectotype strain ATCC 29192.	Kouvelis VN, Davenport KW, Brettin TS, Bruce D, Detter C, Han CS, Nolan M, Tapia R, Damoulaki A, Kyrpides NC, Typas MA, Pappas KM	J Bacteriol	10.1128/JB.05273-11	2011	*

References

#16445

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22645

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#46714 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 17912

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83445

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID6513.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Zymomonas mobilis subsp. pomaceae ATCC 29192

Zymomonas mobilis subsp. pomaceae ATCC 29192 ATCC 29192

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