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Strain identifier

BacDive ID: 14292

Type strain: Yes

Species: Zymomonas mobilis subsp. pomaceae

Strain history: IFO 13757 <-- J. De Ley strain Z.an.a <-- J. van der Toorn strain T. H. Delft <-- B. T. P. Baker strain I.

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 16445

BacDive-ID: 14292

DSM-Number: 22645

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic

description: Zymomonas mobilis subsp. pomaceae DSM 22645 is an aerobe, mesophilic bacterium that was isolated from spoiled ciders.

NCBI tax id

NCBI tax idMatching level
120044subspecies
579138strain

strain history

doi: 10.13145/bacdive14292.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Zymomonadaceae
  • genus: Zymomonas
  • species: Zymomonas mobilis subsp. pomaceae
  • full scientific name: Zymomonas mobilis subsp. pomaceae (Millis 1956) De Ley and Swings 1976 (Approved Lists 1980)

@ref: 16445

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Sphingomonadales

family: Zymomonadaceae

genus: Zymomonas

species: Zymomonas mobilis subsp. pomaceae

full scientific name: Zymomonas mobilis subsp. pomaceae (Millis 1956) De Ley and Swings 1976 emend. Coton et al. 2006

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.205

colony morphology

  • @ref: 46714
  • incubation period: 3-6 days

Culture and growth conditions

culture medium

  • @ref: 16445
  • name: ZYMOMONAS MEDIUM (DSMZ Medium 10)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/10
  • composition: Name: ZYMOMONAS MEDIUM (DSMZ Medium 10) Composition: Glucose 20.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l Bacto peptone 10.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16445positivegrowth28mesophilic
46714positivegrowth28mesophilic
46714positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 46714
  • oxygen tolerance: aerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 97.826

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 98.859

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    46714C12:00.712
    46714C14:018.914
    46714C16:07.216
    46714C13:0 ISO 2OH3.313.814
    46714C16:1 ω7c1.515.819
    46714C18:1 ω7c /12t/9t49.217.824
    46714C19:0 CYCLO ω8c9.918.9
    46714Unidentified0.89.244
    46714Unidentified0.714.135
    46714Unidentified4.514.283
    46714Unidentified1.216.296
    46714Unidentified2.118.141
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
16445-----------+++++++++-

Isolation, sampling and environmental information

isolation

@refsample typecontinentcountryorigin.country
16445spoiled cidersEurope
46714Cider,sickEuropeUnited KingdomGBR
67770Sick ciderEuropeUnited KingdomGBR

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Fermented
#Environmental#Microbial community
#Engineered#Food production#Beverage

taxonmaps

  • @ref: 69479
  • File name: preview.99_6472.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_92;96_237;97_259;98_288;99_6472&stattab=map
  • Last taxonomy: Zymomonas mobilis subclade
  • 16S sequence: AY670649
  • Sequence Identity:
  • Total samples: 28
  • soil counts: 6
  • aquatic counts: 9
  • animal counts: 7
  • plant counts: 6

Safety information

risk assessment

  • @ref: 16445
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Zymomonas mobilis strain ATCC 29192 16S-23S internal transcribed spacer, complete sequenceAF329202231ena579138
20218Zymomonas mobilis subsp. pomaceae strain LMG 448 16S ribosomal RNA gene, partial sequenceAY6706491343ena120044
20218Zymomonas mobilis subsp. pomaceae strain LMG 448 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequenceAY940088683ena120044
16445Zymomonas mobilis strain ATCC29192 16S ribosomal RNA gene, partial sequenceAF2810321452ena579138

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Zymomonas mobilis subsp. pomaceae ATCC 29192 ATCC 29192GCA_000218875completencbi579138
66792Zymomonas mobilis subsp. pomaceae ATCC 29192579138.3completepatric579138
66792Zymomonas mobilis subsp. pomaceae ATCC 29192579138.9plasmidpatric579138
66792Zymomonas mobilis subsp. pomaceae ATCC 29192579138.10plasmidpatric579138
66792Zymomonas mobilis subsp. pomaceae strain NBRC 13757120044.3wgspatric120044
66792Zymomonas mobilis pomaceae Barker 1, ATCC 29192650716107completeimg579138
66792Zymomonas mobilis NBRC 137572894623999draftimg542
67770Zymomonas mobilis subsp. pomaceae NBRC 13757GCA_006539385contigncbi120044
67770Zymomonas mobilis subsp. pomaceae ATCC 29192, complete genomeCP002865ena579138

External links

@ref: 16445

culture collection no.: DSM 22645, ATCC 29192, LMG 448, NCIMB 11200, CCUG 17912, Barker I, JCM 10191, CCM 2771, CECT 814, IFO 13757, LMG 449, LMG 453, LMG 464, LMG 465, LMG 466, NBRC 13757, NRRL B-4491

straininfo link

@refpassport
20218http://www.straininfo.net/strains/27741
20218http://www.straininfo.net/strains/27740
20218http://www.straininfo.net/strains/171104

literature

  • topic: Genetics
  • Pubmed-ID: 21742897
  • title: Genome sequence of the ethanol-producing Zymomonas mobilis subsp. pomaceae lectotype strain ATCC 29192.
  • authors: Kouvelis VN, Davenport KW, Brettin TS, Bruce D, Detter C, Han CS, Nolan M, Tapia R, Damoulaki A, Kyrpides NC, Typas MA, Pappas KM
  • journal: J Bacteriol
  • DOI: 10.1128/JB.05273-11
  • year: 2011
  • mesh: DNA, Bacterial/*chemistry/*genetics, Ethanol/metabolism, Food Microbiology, *Genome, Bacterial, Molecular Sequence Data, *Sequence Analysis, DNA, United Kingdom, Zymomonas/*genetics/isolation & purification/metabolism
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16445Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22645)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22645
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
46714Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 17912)https://www.ccug.se/strain?id=17912
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)