Strain identifier

BacDive ID: 14291

Type strain: No

Species: Zymomonas mobilis subsp. pomaceae

Strain Designation: Z 6

Strain history: IFO 13756 <-- J. De Ley Z-6 <-- J. Swings <-- W. Van Pee.

NCBI tax ID(s): 120044 (subspecies)

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General

@ref: 1408

BacDive-ID: 14291

DSM-Number: 3580

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, alcohol production

description: Zymomonas mobilis subsp. pomaceae Z 6 is an anaerobe, mesophilic, Gram-negative bacterium that produces alcohol and was isolated from fermenting palm sap.

NCBI tax id

  • NCBI tax id: 120044
  • Matching level: subspecies

strain history

@refhistory
1408<- Inst. Biotechnol., KFA Jülich <- ATCC <- J. De Ley; Z 6 <- W. van Pee <- Lab. Microbiol., Univ. Nat. Zaire
67770IFO 13756 <-- J. De Ley Z-6 <-- J. Swings <-- W. Van Pee.

doi: 10.13145/bacdive14291.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Zymomonadaceae
  • genus: Zymomonas
  • species: Zymomonas mobilis subsp. pomaceae
  • full scientific name: Zymomonas mobilis subsp. pomaceae (Millis 1956) De Ley and Swings 1976 (Approved Lists 1980)

@ref: 1408

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Sphingomonadales

family: Zymomonadaceae

genus: Zymomonas

species: Zymomonas mobilis subsp. pomaceae

full scientific name: Zymomonas mobilis subsp. pomaceae (Millis 1956) De Ley and Swings 1976 emend. Coton et al. 2006

strain designation: Z 6

type strain: no

Morphology

cell morphology

@refgram stainconfidence
125438negative96.048
125439negative99.4

Culture and growth conditions

culture medium

  • @ref: 1408
  • name: ZYMOMONAS MEDIUM (DSMZ Medium 10)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/10
  • composition: Name: ZYMOMONAS MEDIUM (DSMZ Medium 10) Composition: Glucose 20.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l Bacto peptone 10.0 g/l Distilled water

culture temp

@refgrowthtypetemperature
1408positivegrowth30
67770positivegrowth30

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
1408anaerobe
125439obligate aerobe94

spore formation

@refspore formationconfidence
125438no91.966
125439no98.9

compound production

@refcompound
1408ethanol
1408levan

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountrycontinent
1408fermenting palm sap
67770Fermenting palm sap (Elaeis sp.)Elaeis sp.KinshasaZaireAfrica

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production
#Host Body Product#Plant#Plant sap (Flux)

taxonmaps

  • @ref: 69479
  • File name: preview.99_337.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_92;96_237;97_259;98_288;99_337&stattab=map
  • Last taxonomy: Zymomonas mobilis subclade
  • 16S sequence: LC506139
  • Sequence Identity:
  • Total samples: 2581
  • soil counts: 1083
  • aquatic counts: 916
  • animal counts: 421
  • plant counts: 161

Safety information

risk assessment

  • @ref: 1408
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Zymomonas mobilis subsp. mobilis gene for 16S rRNA, partial sequence, strain: NBRC 13756AB6805101414nuccore120045
20218Zymomonas mobilis strain ATCC29191 16S ribosomal RNA gene, partial sequenceAF2810341452nuccore627344
20218Zymomonas mobilis strain ATCC 29191 16S-23S internal transcribed spacer, complete sequenceAF329201231nuccore627344
67770Zymomonas mobilis subsp. mobilis JCM 10190 gene for 16S ribosomal RNA, partial sequenceLC5061391411nuccore120045

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Zymomonas mobilis subsp. mobilis ATCC 29191GCA_000277755completencbi627344
66792Zymomonas mobilis subsp. mobilis ATCC 29191627344.13plasmidpatric627344
66792Zymomonas mobilis subsp. mobilis ATCC 29191627344.14plasmidpatric627344
66792Zymomonas mobilis subsp. mobilis ATCC 29191627344.15plasmidpatric627344
66792Zymomonas mobilis subsp. mobilis ATCC 29191627344.8completepatric627344
66792Zymomonas mobilis subsp. mobilis strain NBRC 13756120045.8wgspatric120045
66792Zymomonas mobilis mobilis ATCC 291912634166410completeimg627344
67770Zymomonas mobilis subsp. mobilis NBRC 13756GCA_006539365contigncbi120045

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe94
125439BacteriaNetgram_stainReaction to gram-stainingnegative99.4
125439BacteriaNetmotilityAbility to perform movementyes55.4
125439BacteriaNetspore_formationAbility to form endo- or exosporesno98.9
125438gram-positivegram-positivePositive reaction to Gram-stainingno96.048no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no61.355no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no75.031yes
125438spore-formingspore-formingAbility to form endo- or exosporesno91.966no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno93.127no
125438motile2+flagellatedAbility to perform flagellated movementyes58.444no

External links

@ref: 1408

culture collection no.: DSM 3580, ATCC 29191, IFO 13756, NBRC 13756, NCIB 11199, JCM 10190, CCM 2770, CECT 560, LMG 445, LMG 452, LMG 454, LMG 467, NCIMB 11199, NRRL B-4490

straininfo link

  • @ref: 83444
  • straininfo: 6501

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1408Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3580)https://www.dsmz.de/collection/catalogue/details/culture/DSM-3580
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
83444Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID6501.1StrainInfo: A central database for resolving microbial strain identifiers
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1