Name: Sphingobacterium mizutaii NCTC 12149
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14126

Type strain:

Species: Sphingobacterium mizutaii

Culture col. no.: NCTC 12149, DSM 11724, ATCC 33299, CCUG 15907, GIFU 1203, IFO 14946, LMG 8340, NBRC 14946

Strain history: <- IFO <- GIFU <- S. Mizuta

NCBI tax ID(s): 1220576 (strain), 1010 (species)

Other strains from Sphingobacterium mizutaii

S. mizutaii CCUG 15908
S. mizutaii CCUG 26768

Section

Sphingobacterium mizutaii NCTC 12149 is a mesophilic human pathogen that was isolated from ventricular fluid.

human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	23-11-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Bacteroidetes
	Class	Sphingobacteriia
	Order	Sphingobacteriales
	Family	Sphingobacteriaceae
	Genus	Sphingobacterium
	Species	Sphingobacterium mizutaii
	Full Scientific Name (PNU)	Sphingobacterium mizutaii corrig. Yabuuchi et al. 1983

	Synonym	Flavobacterium mizutaii
	Synonym	Sphingobacterium mizutae

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4456]

Culture medium

Nutrient agar (NA)

[Ref.: #4456]

Culture medium growth

[Ref.: #4456]

Culture medium link

Medium recipe at BacMedia

[Ref.: #4456]

Culture medium composition

expand / minimize

[Ref.: #39762]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #39762]

Culture medium growth

[Ref.: #39762]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4456]			growth	28 °C
[Ref.: #39762]			growth	25 °C

[Ref.: #4456]	Temperature range	mesophilic
[Ref.: #39762]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #46376]	3643	-	+	-	+	-	+	-	-	-	-	+	-	-	-	-	+	-	+	-	-

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #46376]	7282	-	-	-	-	-	+	-	+	+	-	+	-	+	+	-	-	-	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4456]	Sample type/isolated from	ventricular fluid

[Ref.: #46376]	Sample type/isolated from	Human ventricular fluid,fetus

Isolation sources categories

#Host Body-Site	#Organ	#Brain
#Host Body Product	#Fluids	#Cerebrospinal fluid

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4456]	Pathogenicity (human)	yes
[Ref.: #4456]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Sphingobacterium mizutaii gene for 16S rRNA, partial sequence, strain: NBRC 14946	AB680716	1453	ENA	1010 tax ID	*
[Ref.: #20218]	Sphingobacterium mizutae 16S ribosomal RNA	D14024	1270	ENA	1010 tax ID	*
[Ref.: #20218]	Sphingobacterium mizutaii strain LMG 8340 16S ribosomal RNA gene, partial sequence	JF708889	1454	ENA	1010 tax ID	*
[Ref.: #20218]	Flavobacterium mizutaii 16S ribosomal RNA gene, partial sequence	M58796	1478	ENA	1010 tax ID	*
[Ref.: #20218]	S.mizutae (ATCC 33299T) gene for 16S rRNA	X67853	795	ENA	1010 tax ID	*
[Ref.: #4456]	Flavobacterium mizutaii partial 16S rRNA, strain DSM 11724T	AJ438175	1491	ENA	1010 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sphingobacterium mizutaii NCTC12149	GCA_900187125	complete	GenBank	1010 tax ID	*
[Ref.: #66792]	Sphingobacterium mizutaii DSM 11724	GCA_900102835	scaffold	GenBank	1010 tax ID	*
[Ref.: #66792]	Sphingobacterium mizutaii NBRC 14946 = DSM 11724	GCA_007990895	contig	GenBank	1220576 tax ID	*
[Ref.: #66792]	Sphingobacterium mizutaii NBRC 14946 = DSM 11724	1220576.3	wgs	PATRIC	1220576 tax ID	*
[Ref.: #66792]	Sphingobacterium mizutaii strain DSM 11724	1010.7	wgs	PATRIC	1010 tax ID	*
[Ref.: #66792]	Sphingobacterium mizutaii strain NCTC12149	1010.5	complete	PATRIC	1010 tax ID	*

Availability in culture collections External links

[Ref.: #4456]

Culture collection no.

NCTC 12149, DSM 11724, ATCC 33299, CCUG 15907, GIFU 1203, IFO 14946, LMG 8340, NBRC 14946

[Ref.: #20218]

Associated Passport(s) in StrainInfo

278362, 11540, 11541, 11544, 11545, 11539, 487283

References

#4456

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11724

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39762 ; Curators of the CIP;
#46376 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 15907

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These References are textmined

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