Sphingobacterium mizutaii | Type strain | NCTC 12149, DSM 11724, ATCC 33299, CCUG 15907, GIFU 1203, IFO 14946, LMG 8340, NBRC 14946

Strain identifier

BacDive ID: 14126

Type strain:

Species: Sphingobacterium mizutaii

Culture col. no.: NCTC 12149, DSM 11724, ATCC 33299, CCUG 15907, GIFU 1203, IFO 14946, LMG 8340, NBRC 14946

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #4456]	Domain	Bacteria
[Ref.: #4456]	Phylum	Bacteroidetes
[Ref.: #4456]	Class	Sphingobacteriia
[Ref.: #4456]	Order	Sphingobacteriales
[Ref.: #4456]	Family	Sphingobacteriaceae
[Ref.: #4456]	Genus	Sphingobacterium
[Ref.: #4456]	Species	Sphingobacterium mizutaii
[Ref.: #4456]	Full Scientific Name	Sphingobacterium mizutaii Yabuuchi et al. 1983 emend. Choi and Lee 2012 emend. Wauters et al. 2012
[Ref.: #4456]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
	Last PNU update	19-11-2019 (DD-MM-YYYY)
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Bacteroidetes
[Ref.: #20215]	Class	Flavobacteriia		Int. J. Syst. Evol. Microbiol. 62:1017
[Ref.: #20215]	Family	Flavobacteriaceae		Int. J. Syst. Bacteriol. 42:327
[Ref.: #20215]	Genus	Flavobacterium	genus (AL)	Int. J. Syst. Bacteriol. 30:225
[Ref.: #20215]	Species	Flavobacterium mizutaii	comb. nov. (VP), homotypic syn.	Int. J. Syst. Bacteriol. 38:348*
[Ref.: #20215]	Full Scientific Name	Flavobacterium mizutaii (Yabuuchi et al. 1983) Holmes et al. 1988

[Ref.: #20215]

Synonym

Sphingobacterium mizutae

Information on morphological and physiological propertiesMorphology and physiology

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #46376]	7282	-	-	-	-	-	+	-	+	+	-	+	-	+	+	-	-	-	-	-	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #46376]	3643	-	+	-	+	-	+	-	-	-	-	+	-	-	-	-	+	-	+	-	-

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #4456]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1), 28°C

[Ref.: #4456]

Culture medium growth

[Ref.: #4456]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #39762]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #39762]

Culture medium growth

[Ref.: #39762]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4456]			growth	28 ̊C
[Ref.: #39762]			growth	25 ̊C

[Ref.: #4456]	Temperature range	mesophilic
[Ref.: #39762]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #4456]

Sample type/isolated from

ventricular fluid

[Ref.: #46376]

Sample type/isolated from

Human ventricular fluid,fetus

Isolation sources categories

#Host Body-Site	#Organ	#Brain
#Host Body Product	#Fluids	#Cerebrospinal fluid

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #4456]	Pathogenicity (human)	yes
[Ref.: #4456]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence type	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #4456]	16S rRNA gene, Marker Gene (EMBL Direct submission)	Flavobacterium mizutaii partial 16S rRNA, strain DSM 11724T	AJ438175		1491	1010
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Sphingobacterium mizutaii gene for 16S rRNA, partial sequence, strain: NBRC 14946	AB680716	16S	1453	1010	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Sphingobacterium mizutae 16S ribosomal RNA	D14024	16S	1270	1010	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Sphingobacterium mizutaii partial groEL gene for 60 kDa chaperonin, type strain DSM 11724T	FN985019		546	1010	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Sphingobacterium mizutaii strain LMG 8340 16S ribosomal RNA gene, partial sequence	JF708889	16S	1454	1010	*
[Ref.: #20218]	INSDC Sequence	Flavobacterium mizutaii 16S ribosomal RNA gene, partial sequence	M58796	16S	1478	1010	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	S.mizutae (ATCC 33299T) gene for 16S rRNA	X67853	16S	795	1010	*

Availability in culture collectionsStrain availability

[Ref.: #4456]

Culture collection no.

NCTC 12149, DSM 11724, ATCC 33299, CCUG 15907, GIFU 1203, IFO 14946, LMG 8340, NBRC 14946

[Ref.: #4456]

Strain history

<- IFO <- GIFU <- S. Mizuta

[Ref.: #20218]

Associated Passport(s) in StrainInfo

278362, 11540, 11541, 11544, 11545, 11539, 487283

References

#4456

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11724

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39762 ; Curators of the CIP;
#46376 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 15907
* These References are textmined

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Flavobacterium mizutaii in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF