Name: Sphingobacterium thalpophilum K-1173
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14125

Type strain:

Species: Sphingobacterium thalpophilum

Strain Designation: K-1173

Culture col. no.: DSM 11723, ATCC 43320, IFO 14963, NBRC 14963, NCTC 11429, CCUG 22397, JCM 21153, CIP 100935, IAM 14313, NRRL B-14902

Strain history: CIP <- 1984, NCTC, Flavobacterium thalpophilum <- California Univ., Los Angeles, USA <- Isolation Hosp., New York, USA

NCBI tax ID(s): 1123265 (strain), 259 (species)

SI-ID 7613

LMG 11520, CCUG 22397, IFO 14963, NCTC 11429, ATCC 43320, CIP 100935, DSM 11723, NBRC 14963, NRRL B-14902, IAM 14313, NCIMB 13620, JCM 21153

Other strains from Sphingobacterium thalpophilum

S. thalpophilum CIP 100936, NCTC 11430, CCUG 22398
S. thalpophilum CCUG 15894
S. thalpophilum CCUG 15895
S. thalpophilum CCUG 22399, NCTC 11431

Section

Sphingobacterium thalpophilum K-1173 is an obligate aerobe, mesophilic bacterium of the family Sphingobacteriaceae.

mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Sphingobacterium*
	Species	**Sphingobacterium thalpophilum**
	Full Scientific Name (LPSN)	Sphingobacterium thalpophilum (Holmes et al. 1983) Takeuchi and Yokota 1993

Synonym

Flavobacterium thalpophilum

Information on morphological and physiological properties Morphology

[Ref.: #123499]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.984

[Ref.: #123499]	Cell shape	rod-shaped

[Ref.: #123499]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90.848

[Ref.: #123499]

Hemolysis ability

[Ref.: #123499]	Pigment production	no
[Ref.: #123499]	Pigment name	Flexirubin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4455]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #4455]

Culture medium growth

[Ref.: #4455]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4455]

Culture medium composition

expand / minimize

[Ref.: #40269]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #40269]

Culture medium growth

[Ref.: #40269]

Culture medium composition

expand / minimize

[Ref.: #123499]

Culture medium

CIP Medium 3

[Ref.: #123499]

Culture medium growth

[Ref.: #123499]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #123499]

Culture medium

CIP Medium 72

[Ref.: #123499]

Culture medium growth

[Ref.: #123499]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #4455]		growth	28 °C
[Ref.: #40269]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #123499]		growth	5-41 °C
[Ref.: #123499]	no	growth	45 °C

[Ref.: #4455]	Temperature range	mesophilic
[Ref.: #40269]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #123499]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #123499]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.954

	Salt	Tested relation		Salt conc.
[Ref.: #123499]	NaCl		growth	0-4	%
[Ref.: #123499]	NaCl	no	growth	6	%
[Ref.: #123499]	NaCl	no	growth	8	%
[Ref.: #123499]	NaCl	no	growth	10	%

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE, API ID32E
[Ref.: #68374]	cellobiose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #123499]	citrate ChEBI	-	carbon source
[Ref.: #68374]	D-arabitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	D-galacturonic acid ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68374]	D-glucose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68374]	D-mannitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #123499]	esculin ChEBI	+	hydrolysis
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #123499]	hippurate ChEBI	-	hydrolysis
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68374]	L-arabinose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	L-arabitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	L-rhamnose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	lysine ChEBI	-	degradation	* from API ID32E
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #123499]	malonate ChEBI	-	assimilation
[Ref.: #68374]	malonate ChEBI	-	assimilation	* from API ID32E
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68374]	maltose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	myo-inositol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #123499]	nitrate ChEBI	-	builds gas from
[Ref.: #123499]	nitrate ChEBI	+	reduction
[Ref.: #123499]	nitrate ChEBI	-	respiration
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #123499]	nitrite ChEBI	-	builds gas from
[Ref.: #123499]	nitrite ChEBI	-	reduction
[Ref.: #68374]	ornithine ChEBI	-	degradation	* from API ID32E
[Ref.: #68374]	palatinose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	ribitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	sorbitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	sucrose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	trehalose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE, API ID32E
[Ref.: #68369]	urea ChEBI	+	hydrolysis	* from API 20NE, API ID32E
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #123499]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #123499]		indole ChEBI	no
[Ref.: #68374]		indole ChEBI	no	* from API ID32E, API 20NE

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #123499]	acetoin ChEBI	-
[Ref.: #123499]	glucose ChEBI		-
[Ref.: #68374]	indole ChEBI			-	* from API ID32E, API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #123499]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	+	3.2.1.51	* from API zym
[Ref.: #68374]	alpha-galactosidase	+	3.2.1.22	* from API ID32E, API zym
[Ref.: #68374]	alpha-glucosidase	+	3.2.1.20	* from API ID32E, API zym
[Ref.: #68374]	alpha-maltosidase	+		* from API ID32E
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68374]	arginine dihydrolase	-	3.5.3.6	* from API ID32E, API 20NE
[Ref.: #123499]	beta-galactosidase	+	3.2.1.23
[Ref.: #68374]	beta-galactosidase	+	3.2.1.23	* from API ID32E, API zym
[Ref.: #68374]	beta-glucosidase	+	3.2.1.21	* from API ID32E, API 20NE, API zym
[Ref.: #68374]	beta-glucuronidase	+	3.2.1.31	* from API ID32E
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123499]	catalase	+	1.11.1.6
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #123499]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #123499]	gelatinase	-
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68374]	L-aspartate arylamidase	+	3.4.11.21	* from API ID32E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68374]	lipase	+		* from API ID32E
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #123499]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68374]	lysine decarboxylase	-	4.1.1.18	* from API ID32E
[Ref.: #68374]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API ID32E, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123499]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #68374]	ornithine decarboxylase	-	4.1.1.17	* from API ID32E
[Ref.: #123499]	oxidase	+
[Ref.: #123499]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #123499]	tryptophan deaminase	-
[Ref.: #123499]	urease	-	3.5.1.5
[Ref.: #68374]	urease	+	3.5.1.5	* from API ID32E, API 20NE
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #47630]	7406	+	-	-	-	+	+	-	+	+	+	+	-	+	+	-	-	-	-	-	-	+

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #123499]	61	not determinedn.d.	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	+	-	+	-	-	-	-	-	+	-	-	+	+	-	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-

API® ID32E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Ornithine decarboxylaseODC	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Urease/urea hydrolysisURE	Acid from L-arabitolLARL	Acid from D-galacturonic acidGAT	Acid from 5-Ketogluconate5KG	LipaseLIP	Phenol red (Acidification)RP	beta-Glucosidasebeta GLU	Acid from D-mannitolMAN	Acid from maltoseMAL	Acid from D-adonitolADO	Acid from palatinosePLE	beta-Glucuronidasebeta GUR	MalonateMNT	Indole productionIND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta-Galactosidasebeta GAL	Acid from D-glucoseGLU	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	alpha-Glucosidasealpha GLU	alpha-Galactosidasealpha GAL	Acid from trehaloseTRE	Acid from L-rhamnoseRHA	Acid from inositolINO	Acid from cellobioseCEL	Acid from sorbitolSOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
[Ref.: #47630]	877	-	-	-	+	-	-	-	+	+	+	-	-	-	-	+	-	-	+	+	-	-	-	-	+	+	-	-	-	-	-	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #47630]	3745	-	+	+	+	-	+	+	-	+	-	+	+	+	+	-	+	+	+	+	+
[Ref.: #123499]	6654	-	+	+	+	-	+	+	+	+	-	+	+	+	+	-	+	+	+	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #47630]	Sample type/isolated from	Human wound,swab
[Ref.: #47630]	Geographic location (country and/or sea, region)	New York
[Ref.: #47630]	Country	USA
[Ref.: #47630]	Country ISO 3 Code	USA
[Ref.: #47630]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Wound swab
[Ref.: #67770]	Geographic location (country and/or sea, region)	New York
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America

[Ref.: #123499]	Sample type/isolated from	Human, Wound
[Ref.: #123499]	Geographic location (country and/or sea, region)	New York, New York
[Ref.: #123499]	Country	United States of America
[Ref.: #123499]	Country ISO 3 Code	USA
[Ref.: #123499]	Continent	North America

[Ref.: #40269]	Geographic location (country and/or sea, region)	New York City
[Ref.: #40269]	Country	USA
[Ref.: #40269]	Country ISO 3 Code	USA
[Ref.: #40269]	Continent	North America
* marker position based on {}

Isolation sources categories

#Infection	#Patient	#Swab
#Host Body-Site	#Other	#Wound
#Host	#Human	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4455]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #123499]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4455]	Sphingobacterium thalpophilum partial 16S rRNA, strain DSM 11723T	AJ438177	1499	ENA	259 tax ID
[Ref.: #20218]	Sphingobacterium thalpophilum 16S ribosomal RNA gene, partial sequence	M58779	1478	ENA	259 tax ID	*
[Ref.: #20218]	Flavobacterium thalpophilum 16S ribosomal RNA	D14020	1264	ENA	259 tax ID	*
[Ref.: #20218]	Sphingobacterium thalpophilum gene for 16S rRNA, partial sequence, strain: NBRC 14963	AB680725	1453	ENA	259 tax ID	*
[Ref.: #20218]	F.thalpophilum (NCTC 11429) gene for 16S rRNA	X67851	905	ENA	259 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sphingobacterium thalpophilum DSM 11723	GCA_000686625	scaffold	GenBank	1123265 tax ID
[Ref.: #66792]	Sphingobacterium thalpophilum NCTC11429	GCA_901482695	complete	GenBank	259 tax ID	*
[Ref.: #66792]	Sphingobacterium thalpophilum DSM 11723	1123265.3	wgs	PATRIC	1123265 tax ID	*
[Ref.: #66792]	Sphingobacterium thalpophilum strain NCTC11429	259.5	complete	PATRIC	259 tax ID	*
[Ref.: #66792]	Sphingobacterium thalpophilum DSM 11723	2563366725	draft	JGI IMG/M	1123265 tax ID	*

[Ref.: #4455]	GC-content	43.6 mol%	sequence analysis
[Ref.: #67770]	GC-content	41.7 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sphingobacterium thalpophilum NCTC11429 NCBI: GCA_901482695.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphingobacterium thalpophilum NCTC11429 NCBI: GCA_901482695.1
[Ref.: #69480]	flagellated	no	96.151	no
[Ref.: #69480]	gram-positive	no	96.732	no
[Ref.: #69480]	anaerobic	no	99.265	no
[Ref.: #69480]	aerobic	yes	86.248	no
[Ref.: #69480]	halophile	no	93.451	no
[Ref.: #69480]	spore-forming	no	95.016	no
[Ref.: #69480]	thermophile	no	99.573	yes
[Ref.: #69480]	glucose-util	yes	89.982	no
[Ref.: #69480]	motile	no	91.622	no
[Ref.: #69480]	glucose-ferment	no	89.538	yes

Availability in culture collections External links

[Ref.: #4455]

Culture collection no.

DSM 11723, ATCC 43320, IFO 14963, NBRC 14963, NCTC 11429, CCUG 22397, JCM 21153, CIP 100935, IAM 14313, NRRL B-14902

[Ref.: #83292]

SI-ID 7613

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingobacterium pakistanensis sp. nov., a novel plant growth promoting rhizobacteria isolated from rhizosphere of Vigna mungo.	Ahmed I, Ehsan M, Sin Y, Paek J, Khalid N, Hayat R, Chang YH	Antonie Van Leeuwenhoek	10.1007/s10482-013-0077-0	2013	*
Phylogeny	Sphingobacterium detergens sp. nov., a surfactant-producing bacterium isolated from soil.	Marques AM, Burgos-Diaz C, Aranda FJ, Teruel JA, Manresa A, Ortiz A, Farfan M	Int J Syst Evol Microbiol	10.1099/ijs.0.036707-0	2012	*
Phylogeny	Sphingobacterium canadense sp. nov., an isolate from corn roots.	Mehnaz S, Weselowski B, Lazarovits G	Syst Appl Microbiol	10.1016/j.syapm.2007.06.002	2007	*
Phylogeny	Olivibacter sitiensis gen. nov., sp. nov., isolated from alkaline olive-oil mill wastes in the region of Sitia, Crete.	Ntougias S, Fasseas C, Zervakis GI	Int J Syst Evol Microbiol	10.1099/ijs.0.64561-0	2007	*
Enzymology	Structural analysis of sphingophospholipids derived from Sphingobacterium spiritivorum, the type species of genus Sphingobacterium.	Naka T, Fujiwara N, Yano I, Maeda S, Doe M, Minamino M, Ikeda N, Kato Y, Watabe K, Kumazawa Y, Tomiyasu I, Kobayashi K	Biochim Biophys Acta	10.1016/j.bbalip.2003.10.010	2003	*

References

#4455

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11723

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#40269 ; Curators of the CIP;
#47630 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 22397

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#68374

Automatically annotated from API ID32E .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83292

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID7613.1 )

#123499 Collection of Institut Pasteur ; Curators of the CIP; CIP 100935
* These data were automatically processed and therefore are not curated

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Sphingobacterium thalpophilum NCTC11429

Sphingobacterium thalpophilum NCTC11429

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