Name: Pedobacter antarcticus 6B1Y
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14127

Type strain:

Species: Pedobacter antarcticus

Strain Designation: 6B1Y

Culture col. no.: DSM 15311

Strain history: <- S. Shivaji; 6B1Y; the strain designation 6B1Y does not appear in the original publication; 16S rDNA gene sequence is identical with that of the type strain of this species (HM448033) and indicates >99% similarity to Pedobacter piscium

NCBI tax ID(s): 34086 (species)

Other strains from Pedobacter antarcticus

P. antarcticus 4BY, ATCC 51969, MTCC 675 (type strain)
P. antarcticus KS0420, P-48, DSM 11725, CIP 104195, ...
P. antarcticus KS 0427, DSM 11702, AJ 2515

Section

Pedobacter antarcticus 6B1Y is a psychrophilic bacterium that was isolated from water sample.

psychrophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Pedobacter*
	Species	**Pedobacter antarcticus**
	Full Scientific Name (LPSN)	Pedobacter antarcticus (Shivaji et al. 1992) Farfán et al. 2014

	Synonym	Sphingobacterium antarcticum
	Synonym	Pedobacter piscium
	Synonym	Sphingobacterium antarcticus
	Synonym	Sphingobacterium piscium

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5840]

Culture medium

OXOID NUTRIENT BROTH (DSMZ Medium 948)

[Ref.: #5840]

Culture medium growth

[Ref.: #5840]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5840]

Culture medium composition

expand / minimize

[Ref.: #5840]

Culture medium

NUTRIENT AGAR (OXOID CM3) (DSMZ Medium 605)

[Ref.: #5840]

Culture medium growth

[Ref.: #5840]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5840]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5840]			growth	22 °C

[Ref.: #5840]

Temperature range

psychrophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5840]	Sample type/isolated from	water sample
[Ref.: #5840]	Geographic location (country and/or sea, region)	Schirmacher Oasis
[Ref.: #5840]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR733711 (>99% sequence identity) for Pedobacter antarcticus from Microbeatlas

Aquatic Samples	29
Soil Samples	82
Animal Samples	136
Plant Samples	67
Total Samples	314

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5840]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5840]	Sphingobacterium antarcticum partial 16S rRNA gene, isolate 6B1Y	AJ576248	1478	ENA	34086 tax ID
[Ref.: #5840]	Sphingobacterium antarcticum partial 16S rRNA gene, strain DSM15311	FR733711	1509	ENA	34086 tax ID

[Ref.: #5840]

GC-content

40 mol%

Availability in culture collections External links

[Ref.: #5840]

Culture collection no.

DSM 15311

References

#5840

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15311

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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