Strain identifier
BacDive ID: 14126
Type strain:
Species: Sphingobacterium mizutaii
Strain Designation: Teraoka, K M 1203
Strain history: CIP <- 1984, ATCC <- E. Yabuuchi, Japan: strain K M 1203 <- S. Mizuta, Japan <- N. Satoh: strain Teraoka
NCBI tax ID(s): 1220576 (strain), 1010 (species)
General
@ref: 4456
BacDive-ID: 14126
DSM-Number: 11724
keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, rod-shaped, human pathogen
description: Sphingobacterium mizutaii Teraoka is an obligate aerobe, rod-shaped human pathogen that was isolated from ventricular fluid.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1010 | species |
1220576 | strain |
strain history
@ref | history |
---|---|
4456 | <- IFO <- GIFU <- S. Mizuta |
67770 | IAM 14315 <-- IFO 14946 <-- GIFU 1203 <-- S. Mizuta <-- N. Satoh strain Teraoka. |
120984 | CIP <- 1984, ATCC <- E. Yabuuchi, Japan: strain K M 1203 <- S. Mizuta, Japan <- N. Satoh: strain Teraoka |
doi: 10.13145/bacdive14126.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Sphingobacteriia
- order: Sphingobacteriales
- family: Sphingobacteriaceae
- genus: Sphingobacterium
- species: Sphingobacterium mizutaii
- full scientific name: Sphingobacterium mizutaii corrig. Yabuuchi et al. 1983
synonyms
@ref synonym 20215 Sphingobacterium mizutae 20215 Flavobacterium mizutaii
@ref: 4456
domain: Bacteria
phylum: Bacteroidetes
class: Sphingobacteriia
order: Sphingobacteriales
family: Sphingobacteriaceae
genus: Sphingobacterium
species: Sphingobacterium mizutaii
full scientific name: Sphingobacterium mizutaii Yabuuchi et al. 1983 emend. Choi and Lee 2012 emend. Wauters et al. 2012
strain designation: Teraoka, K M 1203
type strain: yes
Morphology
cell morphology
@ref | cell shape | motility | gram stain | confidence |
---|---|---|---|---|
120984 | rod-shaped | no | ||
69480 | negative | 97.976 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
4456 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
39762 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
120984 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
@ref | growth | type | temperature |
---|---|---|---|
4456 | positive | growth | 28 |
39762 | positive | growth | 25 |
67770 | positive | growth | 30 |
120984 | positive | growth | 25-30 |
120984 | no | growth | 10 |
120984 | no | growth | 18 |
120984 | no | growth | 41 |
Physiology and metabolism
oxygen tolerance
- @ref: 120984
- oxygen tolerance: obligate aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | no | 90.184 |
69481 | no | 100 |
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | cellobiose | - | builds acid from | 17057 |
68371 | salicin | - | builds acid from | 17814 |
68371 | esculin | + | builds acid from | 4853 |
68371 | arbutin | - | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | - | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-galactose | - | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-ribose | - | builds acid from | 16988 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
68369 | malate | - | assimilation | 25115 |
68369 | adipate | - | assimilation | 17128 |
68369 | decanoate | - | assimilation | 27689 |
68369 | gluconate | - | assimilation | 24265 |
68369 | maltose | + | assimilation | 17306 |
68369 | N-acetylglucosamine | + | assimilation | 59640 |
68369 | D-mannitol | - | assimilation | 16899 |
68369 | D-mannose | + | assimilation | 16024 |
68369 | L-arabinose | - | assimilation | 30849 |
68369 | D-glucose | + | assimilation | 17634 |
68369 | gelatin | - | hydrolysis | 5291 |
68369 | esculin | + | hydrolysis | 4853 |
68369 | urea | - | hydrolysis | 16199 |
68369 | arginine | - | hydrolysis | 29016 |
68369 | D-glucose | - | fermentation | 17634 |
68369 | tryptophan | - | energy source | 27897 |
68369 | nitrate | - | reduction | 17632 |
120984 | esculin | + | hydrolysis | 4853 |
120984 | nitrate | - | reduction | 17632 |
120984 | nitrite | + | reduction | 16301 |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68369 | 35581 | indole | no |
120984 | 35581 | indole | no |
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68369 | cytochrome oxidase | + | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | + | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
120984 | oxidase | + | |
120984 | beta-galactosidase | + | 3.2.1.23 |
120984 | alcohol dehydrogenase | - | 1.1.1.1 |
120984 | amylase | - | |
120984 | catalase | + | 1.11.1.6 |
120984 | tween esterase | - | |
120984 | lysine decarboxylase | - | 4.1.1.18 |
120984 | ornithine decarboxylase | - | 4.1.1.17 |
120984 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
46376 | - | + | - | + | - | + | - | - | - | - | + | - | - | - | - | + | - | + | - | - |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
46376 | - | - | - | - | - | + | - | + | + | - | + | - | + | + | - | - | - | - | - | - | + |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
120984 | - | - | +/- | +/- | - | +/- | - | - | - | - | +/- | +/- | +/- | - | - | - | - | - | - | - | - | +/- | - | - | + | - | - | +/- | +/- | +/- | +/- | +/- | - | - | - | +/- | +/- | - | +/- | +/- | +/- | - | - | +/- | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
120984 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
4456 | ventricular fluid | ||||
46376 | Human ventricular fluid,fetus | ||||
67770 | Ventricular fluid of fetus | Nagasaki | Japan | JPN | Asia |
120984 | Human, Fetus, ventricular fluid |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host Body-Site | #Organ | #Brain |
#Host Body Product | #Fluids | #Cerebrospinal fluid |
taxonmaps
- @ref: 69479
- File name: preview.99_9651.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15366;96_3818;97_4710;98_7131;99_9651&stattab=map
- Last taxonomy: Sphingobacterium mizutaii subclade
- 16S sequence: JF708889
- Sequence Identity:
- Total samples: 752
- soil counts: 181
- aquatic counts: 192
- animal counts: 333
- plant counts: 46
Safety information
risk assessment
@ref | pathogenicity human | biosafety level | biosafety level comment |
---|---|---|---|
4456 | yes, in single cases | 1 | Risk group (German classification) |
120984 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Sphingobacterium mizutaii gene for 16S rRNA, partial sequence, strain: NBRC 14946 | AB680716 | 1453 | nuccore | 1010 |
20218 | Sphingobacterium mizutae 16S ribosomal RNA | D14024 | 1270 | nuccore | 1010 |
20218 | Sphingobacterium mizutaii strain LMG 8340 16S ribosomal RNA gene, partial sequence | JF708889 | 1454 | nuccore | 1010 |
20218 | Flavobacterium mizutaii 16S ribosomal RNA gene, partial sequence | M58796 | 1478 | nuccore | 1010 |
20218 | S.mizutae (ATCC 33299T) gene for 16S rRNA | X67853 | 795 | nuccore | 1010 |
4456 | Flavobacterium mizutaii partial 16S rRNA, strain DSM 11724T | AJ438175 | 1491 | nuccore | 1010 |
124043 | Sphingobacterium mizutaii strain NCTC 12149 16S ribosomal RNA gene, partial sequence. | OM860309 | 826 | nuccore | 1010 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Sphingobacterium mizutaii NCTC12149 | GCA_900187125 | complete | ncbi | 1010 |
66792 | Sphingobacterium mizutaii NBRC 14946 = DSM 11724 | 1220576.3 | wgs | patric | 1220576 |
66792 | Sphingobacterium mizutaii strain DSM 11724 | 1010.7 | wgs | patric | 1010 |
66792 | Sphingobacterium mizutaii strain NCTC12149 | 1010.5 | complete | patric | 1010 |
66792 | Sphingobacterium mizutaii NCTC 12149 | 2773857900 | complete | img | 1010 |
66792 | Sphingobacterium mizutaii DSM 11724 | 2634166301 | draft | img | 1220576 |
67770 | Sphingobacterium mizutaii NBRC 14946 = DSM 11724 | GCA_007990895 | contig | ncbi | 1220576 |
67770 | Sphingobacterium mizutaii DSM 11724 | GCA_900102835 | scaffold | ncbi | 1010 |
GC content
- @ref: 67770
- GC-content: 40
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
@ref | trait | model | description | prediction | confidence | training_data |
---|---|---|---|---|---|---|
69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.976 | no |
69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.41 | yes |
69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 85.153 | yes |
69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 90.184 | no |
69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 98.5 | no |
69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 85.979 | no |
External links
@ref: 4456
culture collection no.: NCTC 12149, DSM 11724, ATCC 33299, CCUG 15907, GIFU 1203, IFO 14946, LMG 8340, NBRC 14946, JCM 21155, CIP 101122, IAM 14315
straininfo link
- @ref: 83293
- straininfo: 2827
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Enzymology | 14729071 | Structural analysis of sphingophospholipids derived from Sphingobacterium spiritivorum, the type species of genus Sphingobacterium. | Naka T, Fujiwara N, Yano I, Maeda S, Doe M, Minamino M, Ikeda N, Kato Y, Watabe K, Kumazawa Y, Tomiyasu I, Kobayashi K | Biochim Biophys Acta | 10.1016/j.bbalip.2003.10.010 | 2003 | Ceramides/analysis, Chromatography, Thin Layer, Fatty Acids/analysis, Magnetic Resonance Spectroscopy, Molecular Structure, Phospholipids/*chemistry/isolation & purification, Solubility, Spectrometry, Mass, Fast Atom Bombardment, Spectrophotometry, Infrared, Sphingobacterium/*chemistry, Sphingolipids/*chemistry/isolation & purification | Phylogeny |
Phylogeny | 16957095 | Sphingobacterium daejeonense sp. nov., isolated from a compost sample. | Kim KH, Ten LN, Liu QM, Im WT, Lee ST | Int J Syst Evol Microbiol | 10.1099/ijs.0.64406-0 | 2006 | Bacterial Typing Techniques, Base Composition, Base Sequence, DNA, Bacterial/*analysis, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/*analysis/genetics, Sphingobacterium/*classification/genetics/isolation & purification/physiology | Genetics |
Phylogeny | 17625199 | Sphingobacterium composti sp. nov., isolated from cotton-waste composts. | Yoo SH, Weon HY, Jang HB, Kim BY, Kwon SW, Go SJ, Stackebrandt E | Int J Syst Evol Microbiol | 10.1099/ijs.0.64948-0 | 2007 | Aerobiosis, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Gossypium/microbiology, Korea, Locomotion, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Soil, *Soil Microbiology, Sphingobacterium/chemistry/*classification/genetics/*isolation & purification | Genetics |
Phylogeny | 18768611 | Sphingobacterium anhuiense sp. nov., isolated from forest soil. | Wei W, Zhou Y, Wang X, Huang X, Lai R | Int J Syst Evol Microbiol | 10.1099/ijs.0.65864-0 | 2008 | Aerobiosis, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Phylogeny, Quinones/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Soil Microbiology, Sphingobacterium/*classification/genetics/*isolation & purification/physiology, Temperature, *Trees | Genetics |
Phylogeny | 19933581 | Sphingobacterium shayense sp. nov., isolated from forest soil. | He X, Xiao T, Kuang H, Lan X, Tudahong M, Osman G, Fang C, Rahman E | Int J Syst Evol Microbiol | 10.1099/ijs.0.018481-0 | 2009 | Aerobiosis, Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Phylogeny, Pigments, Biological/biosynthesis, Populus/growth & development, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Sphingobacterium/*classification/genetics/*isolation & purification/physiology, Temperature, Trees | Genetics |
Phylogeny | 21551333 | Sphingobacterium wenxiniae sp. nov., a cypermethrin-degrading species from activated sludge. | Zhang J, Zheng JW, Cho BC, Hwang CY, Fang C, He J, Li SP | Int J Syst Evol Microbiol | 10.1099/ijs.0.033118-0 | 2011 | Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Phylogeny, Pyrethrins/*metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, Sodium Chloride/metabolism, Sphingobacterium/*classification/genetics/*isolation & purification/metabolism, Temperature, Vitamin K 2/analysis | Metabolism |
Phylogeny | 22180612 | Sphingobacterium kyonggiense sp. nov., isolated from chloroethene-contaminated soil, and emended descriptions of Sphingobacterium daejeonense and Sphingobacterium mizutaii. | Choi HA, Lee SS | Int J Syst Evol Microbiol | 10.1099/ijs.0.024737-0 | 2011 | Bacterial Typing Techniques, Base Composition, Ceramides/analysis, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Soil Pollutants, Sphingobacterium/*classification/genetics/isolation & purification, Tetrachloroethylene, Trichloroethylene, Vitamin K 2/analogs & derivatives/analysis | Genetics |
Phylogeny | 22199213 | Isolates belonging to CDC group II-i belong predominantly to Sphingobacterium mizutaii Yabuuchi et al. 1983: emended descriptions of S. mizutaii and of the genus Sphingobacterium. | Wauters G, Janssens M, De Baere T, Vaneechoutte M, Deschaght P | Int J Syst Evol Microbiol | 10.1099/ijs.0.037325-0 | 2011 | Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Indoles/*metabolism, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sphingobacterium/*classification/genetics/metabolism | Metabolism |
Phylogeny | 22611196 | Sphingobacterium hotanense sp. nov., isolated from soil of a Populus euphratica forest, and emended descriptions of Sphingobacterium daejeonense and Sphingobacterium shayense. | Xiao T, He X, Cheng G, Kuang H, Ma X, Yusup K, Hamdun M, Gulsimay A, Fang C, Rahman E | Int J Syst Evol Microbiol | 10.1099/ijs.0.030155-0 | 2012 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Phosphatidylethanolamines/analysis, *Phylogeny, Populus/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Sphingobacterium/*classification/genetics/isolation & purification, Sphingomyelins/analysis, Trees/microbiology, Vitamin K 2/analogs & derivatives/analysis | Genetics |
Phylogeny | 28699577 | Sphingobacteriumsoli sp. nov., isolated from soil. | Fu YS, Hussain F, Habib N, Khan IU, Chu X, Duan YQ, Zhi XY, Chen X, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001946 | 2017 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Sphingobacterium/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Phylogeny | 31967955 | Sphingobacterium olei sp. nov., isolated from oil-contaminated soil. | Liu B, Yang X, Sheng M, Yang Z, Qiu J, Wang C, He J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004000 | 2020 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, Nucleic Acid Hybridization, *Petroleum Pollution, Phosphatidylethanolamines/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Sphingobacterium/*classification/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
4456 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11724) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11724 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
39762 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/12663 | ||||
46376 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 15907) | https://www.ccug.se/strain?id=15907 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68369 | Automatically annotated from API 20NE | |||||
68371 | Automatically annotated from API 50CH acid | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
83293 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID2827.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
120984 | Curators of the CIP | Collection of Institut Pasteur (CIP 101122) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20101122 | |||
124043 | Dr. Isabel Schober, Dr. Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy |