Name: Halomonas sp. GOS-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140004

Type strain:

Species: Halomonas sp.

Strain Designation: GOS-1

Culture col. no.: DSM 26667

Strain history: <- T. Gutierrez, Heriot-Watt Univ., Edinburgh, UK; GOS-1 <- T. Gutierrez, Univ. North Carolina at Chapel Hill, USA

NCBI tax ID(s): 1761787 (species)

SI-ID 396738

DSM 26667

Special Collections

DSMZ

Other strains from Halomonas sp.

Section

Halomonas sp. GOS-1 is a motile bacterium that was isolated from oil-contaminated surface water.

motile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	*Halomonas*
	Full Scientific Name (LPSN)	Halomonas Vreeland et al. 1980

	Synonym	"Litchfieldella"
	Synonym	"Franzmannia"
	Synonym	"Billgrantia"
	Synonym	"Onishia"
	Synonym	"Vreelandella"
	Synonym	"Bisbaumannia"
	Synonym	Volcaniella
	Synonym	Deleya

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.417

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42612]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #42612]

Culture medium growth

[Ref.: #42612]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42612]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #42612]			growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42612]	Sample type/isolated from	oil-contaminated surface water
[Ref.: #42612]	Geographic location (country and/or sea, region)	Gulf of Mexico
[Ref.: #42612]	Country	USA
[Ref.: #42612]	Country ISO 3 Code	USA
[Ref.: #42612]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	#Oil (Fuel)
#Environmental	#Aquatic	#Surface water

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC161576 (>99% sequence identity) for Halomonas from Microbeatlas

Aquatic Samples	3268
Soil Samples	321
Animal Samples	696
Plant Samples	83
Total Samples	4368

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42612]	Halomonas sp. GOS-1 16S ribosomal RNA gene, partial sequence	KC161576	1389	GenBank ENA	1276892 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halomonas titanicae DSM 26667	GCA_900099955	scaffold	GenBank ENA	664683 tax ID	*
[Ref.: #66792]	Halomonas sp. DSM 26667	1761787.3	wgs	PATRIC	1761787 tax ID	*
[Ref.: #66792]	Halomonas sp. DSM 26667	2619618960	draft	JGI IMG/M	1761787 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halomonas sp. DSM 26667 PATRIC: 1761787.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halomonas titanicae DSM 26667 NCBI: GCA_900099955.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.417	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.148	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	81.779	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	85.556	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	99.286	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	80.712	no

Availability in culture collections External links

[Ref.: #42612]

Culture collection no.

DSM 26667

[Ref.: #96433]

SI-ID 396738

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42612

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26667

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96433

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396738.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Halomonas sp. in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Halomonas sp. DSM 26667

Halomonas titanicae DSM 26667

Change proposal

Change proposal