Strain identifier

BacDive ID: 140004

Type strain: No

Species: Halomonas sp.

Strain Designation: GOS-1

Strain history: <- T. Gutierrez, Heriot-Watt Univ., Edinburgh, UK; GOS-1 <- T. Gutierrez, Univ. North Carolina at Chapel Hill, USA

NCBI tax ID(s): 1761787 (species)

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General

@ref: 42612

BacDive-ID: 140004

DSM-Number: 26667

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative

description: Halomonas sp. GOS-1 is a mesophilic, Gram-negative bacterium that was isolated from oil-contaminated surface water.

NCBI tax id

  • NCBI tax id: 1761787
  • Matching level: species

strain history

  • @ref: 42612
  • history: <- T. Gutierrez, Heriot-Watt Univ., Edinburgh, UK; GOS-1 <- T. Gutierrez, Univ. North Carolina at Chapel Hill, USA

doi: 10.13145/bacdive140004.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Halomonadaceae
  • genus: Halomonas
  • species: Halomonas sp.
  • full scientific name: Halomonas Vreeland et al. 1980

  • synonyms

    @refsynonym
    20215Bisbaumannia
    20215Vreelandella
    20215Onishia
    20215Franzmannia
    20215Deleya
    20215Billgrantia
    20215Litchfieldella
    20215Volcaniella

@ref: 42612

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Halomonadaceae

genus: Halomonas

species: Halomonas sp.

full scientific name: Halomonas sp.

strain designation: GOS-1

type strain: no

Morphology

cell morphology

@refgram stainconfidence
125438negative99.417
125439negative99.6

Culture and growth conditions

culture medium

  • @ref: 42612
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 19.45 g/l Sodium pyruvate 10.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 42612
  • growth: positive
  • type: growth
  • temperature: 25

Physiology and metabolism

spore formation

  • @ref: 125439
  • spore formation: no
  • confidence: 99.7

Isolation, sampling and environmental information

isolation

  • @ref: 42612
  • sample type: oil-contaminated surface water
  • geographic location: Gulf of Mexico
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination#Oil (Fuel)
#Environmental#Aquatic#Surface water

taxonmaps

  • @ref: 69479
  • File name: preview.99_1813.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_48;96_104;97_1197;98_1433;99_1813&stattab=map
  • Last taxonomy: Halomonas
  • 16S sequence: KC161576
  • Sequence Identity:
  • Total samples: 4368
  • soil counts: 321
  • aquatic counts: 3268
  • animal counts: 696
  • plant counts: 83

Sequence information

16S sequences

  • @ref: 42612
  • description: Halomonas sp. GOS-1 16S ribosomal RNA gene, partial sequence
  • accession: KC161576
  • length: 1389
  • database: nuccore
  • NCBI tax ID: 1276892

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Halomonas titanicae DSM 26667GCA_900099955scaffoldncbi664683
66792Halomonas sp. DSM 266671761787.3wgspatric1761787
66792Halomonas sp. DSM 266672619618960draftimg1761787

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno99.417no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no96.148no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes81.779no
125438spore-formingspore-formingAbility to form endo- or exosporesno85.556no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno99.286yes
125438motile2+flagellatedAbility to perform flagellated movementyes80.712no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno99.7
125439BacteriaNetmotilityAbility to perform movementyes84.8
125439BacteriaNetgram_stainReaction to gram-stainingnegative99.6
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe75.2

External links

@ref: 42612

culture collection no.: DSM 26667

straininfo link

  • @ref: 96433
  • straininfo: 396738

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42612Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-26667Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26667)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
96433Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396738.1
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG