Halomonas sp. (DSM 25419, G5-11)

Name: Halomonas sp. (DSM 25419, G5-11)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158121

Type strain

Strain Designation G5-11

Culture col. no. DSM 25419 G5-11

NCBI tax ID(s) 1486246

Special Collections DSMZ

Links

G5-11 is a mesophilic prokaryote that was isolated from salsa rhizosphere, Haishuo Saltern.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 406956

DSM 25419

@ref 20215

Last LPSN update 2025-12-16 10:07:57

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Oceanospirillales

Family Halomonadaceae

Genus Halomonas

Full scientific name Halomonas Vreeland et al. 1980

Synonyms (8)

Litchfieldella
Bisbaumannia
Onishia
Volcaniella
Franzmannia
Billgrantia
Vreelandella
Deleya

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99
125439		90.7
125439	negative	99.6

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
64700	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
64700	positive	growth	28	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
64700	salsa rhizosphere, Haishuo Saltern	LiaoNing province	China	CHN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Halomonas sp. G5-11	contig		1158993.4		1158993	70
66792	ASM1206284v1 assembly for Halomonas salinarum G5-11	contig	GCA_012062845	1158993.5	2902724392	1158993	61.91

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
64700	Halomonas sp. G5-11 16S ribosomal RNA gene, partial sequence	JQ010842	1507		1158993

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Halomonas salinarum G5-11
NCBI: GCA_012062845

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	71.90	no
125439	gram_stain	BacteriaNetⓘ	negative	99.60	no
125439	motility	BacteriaNetⓘ	yes	90.70	no
125439	spore_formation	BacteriaNetⓘ	no	99.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Halomonas sp. G5-11
PATRIC: 1158993.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	87.37	no
125438	spore-forming	spore-formingⓘ	no	88.81	no
125438	aerobic	aerobicⓘ	yes	72.00	no
125438	thermophilic	thermophileⓘ	no	92.29	yes
125438	flagellated	motile2+ⓘ	yes	72.13	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#64700	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25419
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us