Vibrio cholerae (DSM 106276, A1552)

Name: Vibrio cholerae (DSM 106276, A1552)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 139869

Type strain

Strain Designation A1552

Culture col. no. DSM 106276 A1552

NCBI tax ID(s) 666

Special Collections DSMZ

History <- F. Kemter, Univ. Marburg <- T. Waldminghaus, Univ. Marburg <- M. Blokesch, Ecole Polytechnique Fédérale de Lausanne, Switzerland <- G. Schoolnik and F.H. Yildiz, Stanford University; A1552

Links

Vibrio cholerae A1552 is a bacterium that was isolated from traveler from Peru.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 397687

DSM 106276

@ref 20215

Last LPSN update 2026-02-09 11:33:27

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Vibrio

Species Vibrio cholerae

Full scientific name Vibrio cholerae Pacini 1854 (Approved Lists 1980)

Synonyms (1)

Vibrio albensis

BacDive ID	Other strains from **Vibrio cholerae** (116)	Type strain
130763	V. cholerae strain 3, J4308, 3, CCUG 9118 A, DSM 100200, ... (type strain)
131086	V. cholerae VL 3029, DSM 101014, NCTC 11348, WDCM 00136, ...
134413	V. cholerae Ez 5cp, CIP 56.39
134434	V. cholerae 35A3, CIP A269
134436	V. cholerae Eu5, CIP 56.38
134437	V. cholerae N16961 Smr, CIP 106851
134439	V. cholerae 2830, CIP 106970
134443	V. cholerae AI1853, CIP 104152
134445	V. cholerae AE17504, CIP 104153
134769	V. cholerae O1, CIP 62.14
134770	V. cholerae O14, CIP 62.16
134771	V. cholerae O9, CIP 62.15
134871	V. cholerae B2 (Berne 2), CIP A256
135756	V. cholerae 4Z, CIP 55.91, ATCC 11623, NCTC 8367
135777	V. cholerae CIP 69.41, ATCC 14547, NCIMB 41, CCUG 48664, ...
135898	V. cholerae AC7535, CIP 104154
136198	V. cholerae Makassar 757, CIP 66.2
136572	V. cholerae 182, CIP 106971
136573	V. cholerae 2829, CIP 106969
136586	V. cholerae 723, CIP 106920
136888	V. cholerae MDO19, CIP 104151
137123	V. cholerae CIP 68.10
137402	V. cholerae 335, CIP 106974
137778	V. cholerae 254, CIP 106972
138905	V. cholerae HK1, CIP 63.32
139031	V. cholerae 940041, 569B, CIP 105882
139458	V. cholerae CIP 63.40, ATCC 14730, NCTC 4711
139519	V. cholerae N16961, CIP 106855, ATCC 39315
141274	V. cholerae CCUG 537, ATCC 14733, NCTC 8042, CIP 63.42, ...
141524	V. cholerae CCUG 2569
141525	V. cholerae CCUG 2572
141526	V. cholerae CCUG 2573
141628	V. cholerae CCUG 4070
141968	V. cholerae CCUG 9119, ATCC 14034, NCTC 7254
141969	V. cholerae CCUG 9120, NCTC 7270
141970	V. cholerae CCUG 9121, NCTC 8041
141971	V. cholerae CCUG 9122, ATCC 15748, NCTC 3661
141974	V. cholerae CCUG 9193
141975	V. cholerae CCUG 9194
141976	V. cholerae CCUG 9195
141977	V. cholerae CCUG 9196
141978	V. cholerae CCUG 9197
141979	V. cholerae CCUG 9198
142575	V. cholerae CCUG 13118
142576	V. cholerae CCUG 13119
142577	V. cholerae CCUG 13120
142578	V. cholerae CCUG 13121
142579	V. cholerae CCUG 13122
142580	V. cholerae CCUG 13123
142581	V. cholerae CCUG 13124
142582	V. cholerae CCUG 13125
142768	V. cholerae CCUG 14542
142947	V. cholerae CCUG 15858
143054	V. cholerae CCUG 16570
143055	V. cholerae CCUG 16571
143277	V. cholerae CCUG 18208 A
143427	V. cholerae CCUG 19100
143428	V. cholerae CCUG 19101
143429	V. cholerae CCUG 19102
143443	V. cholerae CCUG 19149
143444	V. cholerae CCUG 19153
143471	V. cholerae CCUG 19445
143551	V. cholerae CCUG 20047
143552	V. cholerae CCUG 20048
143577	V. cholerae CCUG 20308, ATCC 2587
143854	V. cholerae CCUG 21589
143874	V. cholerae CCUG 21688
143875	V. cholerae CCUG 21691
146832	V. cholerae CCUG 32198
147329	V. cholerae CCUG 33379
147381	V. cholerae CCUG 33493
147699	V. cholerae CCUG 34033
148001	V. cholerae CCUG 34649
148028	V. cholerae CCUG 34707, ATCC 51394
148029	V. cholerae CCUG 34708
148949	V. cholerae CCUG 36627
149332	V. cholerae CCUG 37531
149707	V. cholerae CCUG 38251
150362	V. cholerae CCUG 39732
150363	V. cholerae CCUG 39733
150508	V. cholerae CCUG 41448
150672	V. cholerae CCUG 41930
150696	V. cholerae CCUG 41979
150821	V. cholerae CCUG 42464
150832	V. cholerae CCUG 42513
150833	V. cholerae CCUG 42514
150838	V. cholerae CCUG 42534
150854	V. cholerae CCUG 42568
151014	V. cholerae CCUG 43040
151016	V. cholerae CCUG 43042
151285	V. cholerae CCUG 43612
151286	V. cholerae CCUG 43617
151288	V. cholerae CCUG 43628
151310	V. cholerae CCUG 43715
151339	V. cholerae CCUG 43794
151680	V. cholerae CCUG 44618
151700	V. cholerae CCUG 44668
151964	V. cholerae CCUG 45388
151966	V. cholerae CCUG 45390
151968	V. cholerae CCUG 45392
152507	V. cholerae CCUG 46968
152588	V. cholerae CCUG 47153
152715	V. cholerae CCUG 47460
152716	V. cholerae CCUG 47461
153518	V. cholerae CCUG 50018
153801	V. cholerae CCUG 50999
153915	V. cholerae CCUG 51600
154009	V. cholerae CCUG 51963
154463	V. cholerae CCUG 53724
154464	V. cholerae CCUG 53725
154509	V. cholerae CCUG 53967
155197	V. cholerae CCUG 56875
155407	V. cholerae CCUG 57635
155559	V. cholerae CCUG 58152
156054	V. cholerae CCUG 60231
156860	V. cholerae CCUG 66155

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	96.2
125438		91.023
125438	negative	99.917

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
42477	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
42477	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
42477	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	90.5

Spore formation

@ref	Spore formation	Confidence
125439		97.8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68368	30849 ChEBI	L-arabinose	-	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68368	18257 ChEBI	ornithine	+	degradation	from API 20E
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
68368	27897 ChEBI	tryptophan	+	energy source	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68368	16136 ChEBI	hydrogen sulfide		from API 20E
68368	35581 ChEBI	indole		from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68368	35581 ChEBI	indole	+	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68368	cytochrome oxidase	+	1.9.3.1	from API 20E
68368	ornithine decarboxylase	+	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
42477	+	-	-	+	+	-	-	-	+	-	-	+/-	+	-	-	-	+	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
42477	+	-	+	+	+	-	+	-	+	+	+	+/-	+/-	-	-	-	+	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Latitude	Longitude
42477	traveler from Peru	Peru	PER	Middle and South America	-10	-76 -10/-76

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
42477	2	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1794828v1 assembly for Vibrio cholerae A1552	complete	GCA_017948285	666.5466	666	99.29
66792	ASM289285v1 assembly for Vibrio cholerae A1552	complete	GCA_002892855	666.3607	666	99.29
66792	ASM299721v1 assembly for Vibrio cholerae A1552	complete	GCA_002997215	666.3637	666	99.29
66792	ASM309769v1 assembly for Vibrio cholerae A1552	complete	GCA_003097695	666.3624	666	99.24

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Vibrio cholerae A1552
NCBI: GCA_003097695

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.80	no
125439	motility	BacteriaNetⓘ	yes	77.80	no
125439	gram_stain	BacteriaNetⓘ	negative	96.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	90.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vibrio cholerae A1552
NCBI: GCA_017948285.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.92	no
125438	anaerobic	anaerobicⓘ	no	94.20	no
125438	aerobic	aerobicⓘ	no	61.95	no
125438	spore-forming	spore-formingⓘ	no	89.28	no
125438	thermophilic	thermophileⓘ	no	98.99	yes
125438	flagellated	motile2+ⓘ	yes	91.02	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Synchronous termination of replication of the two chromosomes is an evolutionary selected feature in Vibrionaceae.	Kemter FS, Messerschmidt SJ, Schallopp N, Sobetzko P, Lang E, Bunk B, Sproer C, Teschler JK, Yildiz FH, Overmann J, Waldminghaus T.	PLoS Genet	10.1371/journal.pgen.1007251	2018
Metabolism	Role of melanin pigment in expression of Vibrio cholerae virulence factors.	Valeru SP, Rompikuntal PK, Ishikawa T, Vaitkevicius K, Sjoling A, Dolganov N, Zhu J, Schoolnik G, Wai SN	Infect Immun	10.1128/IAI.00929-08	2008
Metabolism	Phosphatidic acid-mediated binding and mammalian cell internalization of the Vibrio cholerae cytotoxin MakA.	Nadeem A, Alam A, Toh E, Myint SL, Ur Rehman Z, Liu T, Bally M, Arnqvist A, Wang H, Zhu J, Persson K, Uhlin BE, Wai SN	PLoS Pathog	10.1371/journal.ppat.1009414	2021
Genetics	Comparison of chitin-induced natural transformation in pandemic Vibrio cholerae O1 El Tor strains.	Stutzmann S, Blokesch M	Environ Microbiol	10.1111/1462-2920.15214	2020
Metabolism	Elevated levels of VCA0117 (VasH) in response to external signals activate the type VI secretion system of Vibrio cholerae O1 El Tor A1552.	Seibt H, Aung KM, Ishikawa T, Sjostrom A, Gullberg M, Atkinson GC, Wai SN, Shingler V	Environ Microbiol	10.1111/1462-2920.15141	2020
Genetics	Long-Read-Based Genome Sequences of Pandemic and Environmental Vibrio cholerae Strains.	Matthey N, Drebes Dorr NC, Blokesch M	Microbiol Resour Announc	10.1128/MRA.01574-18	2018
Genetics	Closed Genome Sequence of Vibrio cholerae O1 El Tor Inaba Strain A1552.	Allue-Guardia A, Echazarreta M, Koenig SSK, Klose KE, Eppinger M	Genome Announc	10.1128/genomeA.00098-18	2018
Metabolism	Role of the Vibrio cholerae matrix protein Bap1 in cross-resistance to antimicrobial peptides.	Duperthuy M, Sjostrom AE, Sabharwal D, Damghani F, Uhlin BE, Wai SN	PLoS Pathog	10.1371/journal.ppat.1003620	2013
Metabolism	A functional VipA-VipB interaction is required for the type VI secretion system activity of Vibrio cholerae O1 strain A1552.	Broms JE, Ishikawa T, Wai SN, Sjostedt A	BMC Microbiol	10.1186/1471-2180-13-96	2013
Metabolism	Pathoadaptive conditional regulation of the type VI secretion system in Vibrio cholerae O1 strains.	Ishikawa T, Sabharwal D, Broms J, Milton DL, Sjostedt A, Uhlin BE, Wai SN	Infect Immun	10.1128/IAI.05510-11	2011
Metabolism	In situ grazing resistance of Vibrio cholerae in the marine environment.	Erken M, Weitere M, Kjelleberg S, McDougald D	FEMS Microbiol Ecol	10.1111/j.1574-6941.2011.01067.x	2011
Genetics	Quorum sensing regulation of the two hcp alleles in Vibrio cholerae O1 strains.	Ishikawa T, Rompikuntal PK, Lindmark B, Milton DL, Wai SN	PLoS One	10.1371/journal.pone.0006734	2009
Pathogenicity	A novel sRNA that modulates virulence and environmental fitness of Vibrio cholerae.	Song T, Wai SN	RNA Biol	10.4161/rna.6.3.8371	2009
Metabolism	A new Vibrio cholerae sRNA modulates colonization and affects release of outer membrane vesicles.	Song T, Mika F, Lindmark B, Liu Z, Schild S, Bishop A, Zhu J, Camilli A, Johansson J, Vogel J, Wai SN	Mol Microbiol	10.1111/j.1365-2958.2008.06392.x	2008
	Experimental evolution of Vibrio cholerae identifies hypervesiculation as a way to increase motility in the presence of polymyxin B.	Giacomucci S, Mathieu-Denoncourt A, Vincent AT, Jannadi H, Duperthuy M	Front Microbiol	10.3389/fmicb.2022.932165	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#42477	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106276
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68368	Automatically annotated from API 20E .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Vibrio cholerae (DSM 106276, A1552)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_017948285

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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