Name: Vibrio cholerae A1552
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 139869

Type strain:

Species: Vibrio cholerae

Strain Designation: A1552

Culture col. no.: DSM 106276

Strain history: <- F. Kemter, Univ. Marburg <- T. Waldminghaus, Univ. Marburg <- M. Blokesch, Ecole Polytechnique Fédérale de Lausanne, Switzerland <- G. Schoolnik and F.H. Yildiz, Stanford University; A1552

NCBI tax ID(s): 666 (species)

SI-ID 397687

DSM 106276

Special Collections

DSMZ

Other strains from Vibrio cholerae

Section

Vibrio cholerae A1552 is a Gram-negative bacterium that was isolated from traveler from Peru.

Gram-negative
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Vibrio*
	Species	**Vibrio cholerae**
	Full Scientific Name (LPSN)	Vibrio cholerae Pacini 1854 (Approved Lists 1980)

Synonym

Vibrio albensis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.917

[Ref.: #69480]	Motility	yes Confidence in %91.023

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42477]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #42477]

Culture medium growth

[Ref.: #42477]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42477]

Culture medium composition

expand / minimize

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Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #42477]

Culture medium growth

[Ref.: #42477]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42477]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #42477]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	L-arabinose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	+	energy source	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68368]		hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]		indole ChEBI	yes	* from API 20E

	Physiological tests	Metabolite	Indole test
[Ref.: #68368]		indole ChEBI	+	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	cytochrome oxidase	+	1.9.3.1	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #42477]	17911	+	-	-	+	+	-	-	-	+	-	-	+/-	+	-	-	-	+	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #42477]	17799	+	-	+	+	+	-	+	-	+	+	+	+/-	+/-	-	-	-	+	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42477]	Sample type/isolated from	traveler from Peru
[Ref.: #42477]	Country	Peru
[Ref.: #42477]	Country ISO 3 Code	PER
[Ref.: #42477]	Continent	Middle and South America
[Ref.: #42477]	Geographic location	-10.0000°/-76.0000°
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42477]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Vibrio cholerae A1552	GCA_017948285	complete	GenBank ENA	666 tax ID	*
[Ref.: #66792]	Vibrio cholerae A1552	GCA_003097695	complete	GenBank ENA	666 tax ID	*
[Ref.: #66792]	Vibrio cholerae A1552	GCA_002892855	complete	GenBank ENA	666 tax ID	*
[Ref.: #66792]	Vibrio cholerae A1552	GCA_002997215	complete	GenBank ENA	666 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Vibrio cholerae A1552 NCBI: GCA_017948285.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.917	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.195	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	61.947	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.282	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.99	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	91.023	no

Availability in culture collections External links

[Ref.: #42477]

Culture collection no.

DSM 106276

[Ref.: #96309]

SI-ID 397687

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Role of melanin pigment in expression of Vibrio cholerae virulence factors.	Valeru SP, Rompikuntal PK, Ishikawa T, Vaitkevicius K, Sjoling A, Dolganov N, Zhu J, Schoolnik G, Wai SN	Infect Immun	10.1128/IAI.00929-08	2008	*
Metabolism	Phosphatidic acid-mediated binding and mammalian cell internalization of the Vibrio cholerae cytotoxin MakA.	Nadeem A, Alam A, Toh E, Myint SL, Ur Rehman Z, Liu T, Bally M, Arnqvist A, Wang H, Zhu J, Persson K, Uhlin BE, Wai SN	PLoS Pathog	10.1371/journal.ppat.1009414	2021	*
Genetics	Comparison of chitin-induced natural transformation in pandemic Vibrio cholerae O1 El Tor strains.	Stutzmann S, Blokesch M	Environ Microbiol	10.1111/1462-2920.15214	2020	*
Metabolism	Elevated levels of VCA0117 (VasH) in response to external signals activate the type VI secretion system of Vibrio cholerae O1 El Tor A1552.	Seibt H, Aung KM, Ishikawa T, Sjostrom A, Gullberg M, Atkinson GC, Wai SN, Shingler V	Environ Microbiol	10.1111/1462-2920.15141	2020	*
Genetics	Long-Read-Based Genome Sequences of Pandemic and Environmental Vibrio cholerae Strains.	Matthey N, Drebes Dorr NC, Blokesch M	Microbiol Resour Announc	10.1128/MRA.01574-18	2018	*
Genetics	Closed Genome Sequence of Vibrio cholerae O1 El Tor Inaba Strain A1552.	Allue-Guardia A, Echazarreta M, Koenig SSK, Klose KE, Eppinger M	Genome Announc	10.1128/genomeA.00098-18	2018	*
Metabolism	Role of the Vibrio cholerae matrix protein Bap1 in cross-resistance to antimicrobial peptides.	Duperthuy M, Sjostrom AE, Sabharwal D, Damghani F, Uhlin BE, Wai SN	PLoS Pathog	10.1371/journal.ppat.1003620	2013	*
Metabolism	A functional VipA-VipB interaction is required for the type VI secretion system activity of Vibrio cholerae O1 strain A1552.	Broms JE, Ishikawa T, Wai SN, Sjostedt A	BMC Microbiol	10.1186/1471-2180-13-96	2013	*
Metabolism	Pathoadaptive conditional regulation of the type VI secretion system in Vibrio cholerae O1 strains.	Ishikawa T, Sabharwal D, Broms J, Milton DL, Sjostedt A, Uhlin BE, Wai SN	Infect Immun	10.1128/IAI.05510-11	2011	*
Metabolism	In situ grazing resistance of Vibrio cholerae in the marine environment.	Erken M, Weitere M, Kjelleberg S, McDougald D	FEMS Microbiol Ecol	10.1111/j.1574-6941.2011.01067.x	2011	*
Genetics	Quorum sensing regulation of the two hcp alleles in Vibrio cholerae O1 strains.	Ishikawa T, Rompikuntal PK, Lindmark B, Milton DL, Wai SN	PLoS One	10.1371/journal.pone.0006734	2009	*
Pathogenicity	A novel sRNA that modulates virulence and environmental fitness of Vibrio cholerae.	Song T, Wai SN	RNA Biol	10.4161/rna.6.3.8371	2009	*
Metabolism	A new Vibrio cholerae sRNA modulates colonization and affects release of outer membrane vesicles.	Song T, Mika F, Lindmark B, Liu Z, Schild S, Bishop A, Zhu J, Camilli A, Johansson J, Vogel J, Wai SN	Mol Microbiol	10.1111/j.1365-2958.2008.06392.x	2008	*
	Experimental evolution of Vibrio cholerae identifies hypervesiculation as a way to increase motility in the presence of polymyxin B.	Giacomucci S, Mathieu-Denoncourt A, Vincent AT, Jannadi H, Duperthuy M	Front Microbiol	10.3389/fmicb.2022.932165	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42477

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106276

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#96309

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397687.1 )

* These data were automatically processed and therefore are not curated

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