Name: Yersinia pseudotuberculosis 32
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 136993

Type strain:

Species: Yersinia pseudotuberculosis

Strain Designation: 32

Culture col. no.: CIP 55.89, ATCC 13979, NCTC 8580

Strain history: CIP <- 1955, G. Girard, Inst. Pasteur, Paris, France, Pasteurella pseudotuberculosis <- E. Thal, Stockholm, Sweden: strain 32

NCBI tax ID(s): 633 (species)

SI-ID 44468

ATCC 13979, NCTC 8580, CIP 55.89

Other strains from Yersinia pseudotuberculosis

Section

Yersinia pseudotuberculosis 32 is a mesophilic, motile bacterium that was isolated from Animal, Hare.

motile
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Yersiniaceae*
	Genus	*Yersinia*
	Species	**Yersinia pseudotuberculosis**
	Full Scientific Name (LPSN)	Yersinia pseudotuberculosis (Pfeiffer 1889) Smith and Thal 1965 (Approved Lists 1980)

	Synonym	"Bacillus* pseudotuberkulosis"*
	Synonym	Pasteurella lymphangitidis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.983

[Ref.: #69480]	Motility	yes Confidence in %98.598

Information on culture and growth conditions Culture and growth conditions

[Ref.: #36806]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #36806]

Culture medium growth

[Ref.: #36806]

Culture medium composition

expand / minimize

[Ref.: #36806]

Culture medium

CIP Medium 3

[Ref.: #36806]

Culture medium growth

[Ref.: #36806]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #36806]			growth	30 °C

[Ref.: #36806]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.366

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #36806]	Sample type/isolated from	Animal, Hare
[Ref.: #36806]	Country	Sweden
[Ref.: #36806]	Country ISO 3 Code	SWE
[Ref.: #36806]	Continent	Europe
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #36806]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Yersinia pseudotuberculosis NCTC8580	GCA_900460685	contig	GenBank	633 tax ID	*
[Ref.: #66792]	Yersinia pseudotuberculosis strain NCTC8580	633.133	wgs	PATRIC	633 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Yersinia pseudotuberculosis strain NCTC8580 PATRIC: 633.133
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Yersinia pseudotuberculosis strain NCTC8580 PATRIC: 633.133
[Ref.: #69480]	gram-positive	no	98.416	no
[Ref.: #69480]	anaerobic	no	98.23	no
[Ref.: #69480]	halophile	no	89.489	no
[Ref.: #69480]	spore-forming	no	94.668	no
[Ref.: #69480]	glucose-util	yes	95.959	no
[Ref.: #69480]	flagellated	yes	52.813	no
[Ref.: #69480]	aerobic	yes	91.738	no
[Ref.: #69480]	thermophile	no	98.219	yes
[Ref.: #69480]	motile	yes	89.282	no
[Ref.: #69480]	glucose-ferment	yes	93.766	no

Availability in culture collections External links

[Ref.: #36806]

Culture collection no.

CIP 55.89, ATCC 13979, NCTC 8580

[Ref.: #93984]

SI-ID 44468

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#36806 Collection of Institut Pasteur ; Curators of the CIP; CIP 55.89

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#93984

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID44468.1 )

* These data were automatically processed and therefore are not curated

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Yersinia pseudotuberculosis strain NCTC8580

Yersinia pseudotuberculosis strain NCTC8580

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