Strain identifier
BacDive ID: 136993
Type strain: 
Species: Yersinia pseudotuberculosis
Strain Designation: 32
Strain history: CIP <- 1955, G. Girard, Inst. Pasteur, Paris, France, Pasteurella pseudotuberculosis <- E. Thal, Stockholm, Sweden: strain 32
NCBI tax ID(s): 633 (species)
version 8.1 (current version)
General
@ref: 36806
BacDive-ID: 136993
keywords: genome sequence, Bacteria, mesophilic, motile
description: Yersinia pseudotuberculosis 32 is a mesophilic, motile bacterium that was isolated from Animal, Hare.
NCBI tax id
- NCBI tax id: 633
- Matching level: species
strain history
- @ref: 36806
- history: CIP <- 1955, G. Girard, Inst. Pasteur, Paris, France, Pasteurella pseudotuberculosis <- E. Thal, Stockholm, Sweden: strain 32
doi: 10.13145/bacdive136993.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Yersiniaceae
- genus: Yersinia
- species: Yersinia pseudotuberculosis
- full scientific name: Yersinia pseudotuberculosis (Pfeiffer 1889) Smith and Thal 1965 (Approved Lists 1980)
synonyms
@ref synonym 20215 Bacillus pseudotuberkulosis 20215 Pasteurella lymphangitidis
@ref: 36806
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Yersiniaceae
genus: Yersinia
species: Yersinia pseudotuberculosis
strain designation: 32
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 98.598 | |
| 69480 | 99.983 | negative |
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 36806 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
| 36806 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
- @ref: 36806
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.366 |
Isolation, sampling and environmental information
isolation
- @ref: 36806
- sample type: Animal, Hare
- country: Sweden
- origin.country: SWE
- continent: Europe
Safety information
risk assessment
- @ref: 36806
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Yersinia pseudotuberculosis NCTC8580 | GCA_900460685 | contig | ncbi | 633 |
| 66792 | Yersinia pseudotuberculosis strain NCTC8580 | 633.133 | wgs | patric | 633 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 98.416 | no |
| anaerobic | no | 98.23 | no |
| halophile | no | 89.489 | no |
| spore-forming | no | 94.668 | no |
| glucose-util | yes | 95.959 | no |
| flagellated | yes | 52.813 | no |
| aerobic | yes | 91.738 | no |
| thermophile | no | 98.219 | yes |
| motile | yes | 89.282 | no |
| glucose-ferment | yes | 93.766 | no |
External links
@ref: 36806
culture collection no.: CIP 55.89, ATCC 13979, NCTC 8580
straininfo link
- @ref: 93984
- straininfo: 44468
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 36806 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2055.89 | Collection of Institut Pasteur (CIP 55.89) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 93984 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID44468.1 |