Yersinia pseudotuberculosis CARE_00006 is a Gram-negative, motile, rod-shaped bacterium that was isolated from Human, Stools.
Gram-negative motile rod-shaped genome sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Yersiniaceae |
| Genus Yersinia |
| Species Yersinia pseudotuberculosis |
| Full scientific name Yersinia pseudotuberculosis (Pfeiffer 1889) Smith and Thal 1965 (Approved Lists 1980) |
| Synonyms (2) |
| @ref | Gram stain | Cell shape | Motility | |
|---|---|---|---|---|
| 122006 | negative | rod-shaped |
| @ref | Name | Growth | Medium link | |
|---|---|---|---|---|
| 122006 | CIP Medium 72 | Medium recipe at CIP |
| 122006 | Spore formationno |
| @ref | Sample type | Geographic location | Country | Country ISO 3 Code | Continent | Isolation date | |
|---|---|---|---|---|---|---|---|
| 122006 | Human, Stools | Primorski (Siberia) | Russian Federation | RUS | Europe | 1966 |
| @ref | Biosafety level | Biosafety level comment | |
|---|---|---|---|
| 122006 | 2 | Risk group (French classification) |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 124043 | ASM1694v1 assembly for Yersinia pseudotuberculosis IP 31758 | complete | 349747 | 98.81 |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Impact of MgtC on the Fitness of Yersinia pseudotuberculosis. | Li P, Wang H, Sun W, Ding J. | Pathogens | 10.3390/pathogens12121428 | 2023 | ||
| Activity Against Musca domestica of Hypocrealean Fungi Isolated from Culicids in Central Brazil and Formulated in Vermiculite. | Paramo MER, Dos Santos KR, Filgueiras MDG, Fernandes EKK, Montalva C, Humber RA, Luz C. | Neotrop Entomol | 10.1007/s13744-022-00963-w | 2022 | ||
| Comparative analysis of three plasmids from Plesiomonas shigelloides strain MS-17-188 and their role in antimicrobial resistance. | Abdelhamed H, Mannan SB, Riman MM, Tekedar HC, Lawrence ML. | JAC Antimicrob Resist | 10.1093/jacamr/dlae109 | 2024 | ||
| Stress | Differential susceptibility of blastospores and aerial conidia of entomopathogenic fungi to heat and UV-B stresses. | Bernardo CDC, Pereira-Junior RA, Luz C, Mascarin GM, Kamp Fernandes EK. | Fungal Biol | 10.1016/j.funbio.2020.04.003 | 2020 | |
| Genetics | Repeated plague infections across six generations of Neolithic Farmers. | Seersholm FV, Sjogren KG, Koelman J, Blank M, Svensson EM, Staring J, Fraser M, Pinotti T, McColl H, Gaunitz C, Ruiz-Bedoya T, Granehall L, Villegas-Ramirez B, Fischer A, Price TD, Allentoft ME, Iversen AKN, Axelsson T, Ahlstrom T, Gotherstrom A, Stora J, Kristiansen K, Willerslev E, Jakobsson M, Malmstrom H, Sikora M. | Nature | 10.1038/s41586-024-07651-2 | 2024 | |
| Metabolism | Comparative in-silico proteomic analysis discerns potential granuloma proteins of Yersinia pseudotuberculosis. | Aswal M, Garg A, Singhal N, Kumar M. | Sci Rep | 10.1038/s41598-020-59924-1 | 2020 | |
| In silico structural homology modeling and characterization of multiple N-terminal domains of selected bacterial Tcps. | Alaidarous M. | PeerJ | 10.7717/peerj.10143 | 2020 | ||
| A conjugative 38 kB plasmid is present in multiple subspecies of Xylella fastidiosa. | Rogers EE, Stenger DC. | PLoS One | 10.1371/journal.pone.0052131 | 2012 | ||
| Synthesis of a New Purine Analogue Class with Antifungal Activity and Improved Potency against Fungal IP3-4K. | Desmarini D, Truong D, Sethiya P, Liu G, Bowring B, Jessen H, Dinh H, Cain AK, Thompson PE, Djordjevic JT. | ACS Infect Dis | 10.1021/acsinfecdis.4c00975 | 2025 | ||
| Antimicrobial triterpenes from the stem bark of Crossopteryx febrifuga. | Chouna JR, Tamokou JD, Nkeng-Efouet-Alango P, Lenta BN, Sewald N. | Z Naturforsch C J Biosci | 10.1515/znc-2014-4168 | 2015 | ||
| Effect of formulated Metarhizium anisopliae on eggs and eclosing nymphs of Triatoma infestans | Rodrigues J, Lobo LS, Fernandes EKK, Luz C. | J Appl Entomol | 10.1111/jen.12183 | 2015 | ||
| Limitations of antifungal prophylaxis in preventing invasive Candida surgical site infections after liver transplant surgery. | Carugati M, Arif S, Yarrington ME, King LY, Harris M, Evans K, Barbas AS, Sudan DL, Perfect JR, Miller RA, Alexander BD. | Antimicrob Agents Chemother | 10.1128/aac.01279-23 | 2024 | ||
| Harnessing environmental microbiological interventions with micro- and macroorganisms for assessing cattle tick management. | Filgueiras MDG, Mascarin GM, Lima VH, Barreto LP, de Souza Ribeiro-Silva C, do Nascimento Pinto SM, Rizzo PV, Freitas FMC, de Freitas Soares FE, Monteiro C, Fernandes EKK. | Sci Rep | 10.1038/s41598-025-90123-y | 2025 | ||
| Phylogeny | Whole-Genome k-mer Topic Modeling AssociatesBacterial Families. | Borrayo-Carbajal E, May-Canche I, Paredes O, Morales JA, Romo-Vazquez R, Velez-Perez H. | Genes (Basel) | 10.3390/genes11020197 | 2020 | |
| Metabolism | A novel OmpY porin from Yersinia pseudotuberculosis: structure, channel-forming activity and trimer thermal stability. | Solov'eva TF, Likhatskaya GN, Khomenko VA, Stenkova AM, Kim NY, Portnyagina OY, Novikova OD, Trifonov EV, Nurminski EA, Isaeva MP. | J Biomol Struct Dyn | 10.1080/07391102.2011.10508592 | 2011 | |
| Proteome | Identification of Microorganisms by Liquid Chromatography-Mass Spectrometry (LC-MS1) and in Silico Peptide Mass Libraries. | Lasch P, Schneider A, Blumenscheit C, Doellinger J. | Mol Cell Proteomics | 10.1074/mcp.tir120.002061 | 2020 | |
| Genetics | Four novel algal virus genomes discovered from Yellowstone Lake metagenomes. | Zhang W, Zhou J, Liu T, Yu Y, Pan Y, Yan S, Wang Y. | Sci Rep | 10.1038/srep15131 | 2015 | |
| Convergent Evolution of the Barnase/EndoU/Colicin/RelE (BECR) Fold in Antibacterial tRNase Toxins. | Gucinski GC, Michalska K, Garza-Sanchez F, Eschenfeldt WH, Stols L, Nguyen JY, Goulding CW, Joachimiak A, Hayes CS. | Structure | 10.1016/j.str.2019.08.010 | 2019 | ||
| LcrQ blocks the role of LcrF in regulating the Ysc-Yop type III secretion genes in Yersinia pseudotuberculosis. | Li L, Yan H, Feng L, Li Y, Lu P, Hu Y, Chen S. | PLoS One | 10.1371/journal.pone.0092243 | 2014 | ||
| TIR domain-containing adaptor SARM is a late addition to the ongoing microbe-host dialog. | Zhang Q, Zmasek CM, Cai X, Godzik A. | Dev Comp Immunol | 10.1016/j.dci.2010.11.013 | 2011 | ||
| Crystal structure of an Fe-S cluster-containing fumarate hydratase enzyme from Leishmania major reveals a unique protein fold. | Feliciano PR, Drennan CL, Nonato MC. | Proc Natl Acad Sci U S A | 10.1073/pnas.1605031113 | 2016 | ||
| Effects of orange juice pH on survival, urease activity and DNA profiles of Yersinia enterocolitica and Yersinia pseudotuberculosis stored at 4 degree C. | Abdela W, Graham M, Tsegaye H, Temesgen S, Yehualaeshet T. | J Food Saf | 10.1111/j.1745-4565.2011.00325.x | 2011 | ||
| Pseudo-outbreak of toxigenic Bacillus cereus isolated from stools of three patients with diarrhoea after oral administration of a probiotic medication. | Kniehl E, Becker A, Forster DH. | J Hosp Infect | 10.1016/s0195-6701(03)00133-6 | 2003 | ||
| Genetics | Whole Genome Sequencing Differentiates Presumptive Extended Spectrum Beta-Lactamase Producing Escherichia coli along Segments of the One Health Continuum. | Adator EH, Walker M, Narvaez-Bravo C, Zaheer R, Goji N, Cook SR, Tymensen L, Hannon SJ, Church D, Booker CW, Amoako K, Nadon CA, Read R, McAllister TA. | Microorganisms | 10.3390/microorganisms8030448 | 2020 | |
| Genetics | YersiniaBase: a genomic resource and analysis platform for comparative analysis of Yersinia. | Tan SY, Dutta A, Jakubovics NS, Ang MY, Siow CC, Mutha NV, Heydari H, Wee WY, Wong GJ, Choo SW. | BMC Bioinformatics | 10.1186/s12859-014-0422-y | 2015 | |
| Metabolism | Compartment and signal-specific codependence in the transcriptional control of Salmonella periplasmic copper homeostasis. | Pezza A, Pontel LB, Lopez C, Soncini FC. | Proc Natl Acad Sci U S A | 10.1073/pnas.1603192113 | 2016 | |
| Genetics | Using Mahalanobis distance to compare genomic signatures between bacterial plasmids and chromosomes. | Suzuki H, Sota M, Brown CJ, Top EM. | Nucleic Acids Res | 10.1093/nar/gkn753 | 2008 | |
| Recent advances in molecular technologies and their application in pathogen detection in foods with particular reference to yersinia. | Gui J, Patel IR. | J Pathog | 10.4061/2011/310135 | 2011 | ||
| Metabolism | Comparative genomics of the Type VI secretion systems of Pantoea and Erwinia species reveals the presence of putative effector islands that may be translocated by the VgrG and Hcp proteins. | De Maayer P, Venter SN, Kamber T, Duffy B, Coutinho TA, Smits TH. | BMC Genomics | 10.1186/1471-2164-12-576 | 2011 | |
| Metabolism | [The anticomplement activity of the commercial strain of Bacillus cereus IP 5832 and of enterobacteria when cocultured]. | Brudastov IuA, Valyshev AV, Brudastov AN. | Zh Mikrobiol Epidemiol Immunobiol | 1996 | ||
| Phylogeny | Identification and classification of bacterial Type III toxin-antitoxin systems encoded in chromosomal and plasmid genomes. | Blower TR, Short FL, Rao F, Mizuguchi K, Pei XY, Fineran PC, Luisi BF, Salmond GP. | Nucleic Acids Res | 10.1093/nar/gks231 | 2012 | |
| Pathogenicity | Antimicrobial and antioxidant flavonoids from the leaves of Oncoba spinosa Forssk. (Salicaceae). | Djouossi MG, Tamokou JD, Ngnokam D, Kuiate JR, Tapondjou LA, Harakat D, Voutquenne-Nazabadioko L. | BMC Complement Altern Med | 10.1186/s12906-015-0660-1 | 2015 | |
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| Antifungal and antioxidant activity of Crassocephalum bauchiense (Hutch.) Milne-Redh ethyl acetate extract and fractions (Asteraceae). | Mouokeu RS, Ngane RA, Njateng GS, Kamtchueng MO, Kuiate JR. | BMC Res Notes | 10.1186/1756-0500-7-244 | 2014 | ||
| Genetics | Natural products genomics. | Siezen RJ, Khayatt BI. | Microb Biotechnol | 10.1111/j.1751-7915.2008.00044.x | 2008 | |
| Towards a more accurate annotation of tyrosine-based site-specific recombinases in bacterial genomes. | Van Houdt R, Leplae R, Lima-Mendez G, Mergeay M, Toussaint A. | Mob DNA | 10.1186/1759-8753-3-6 | 2012 | ||
| Bacterial phylogenetic tree construction based on genomic translation stop signals. | Xu L, Kuo J, Liu JK, Wong TY. | Microb Inform Exp | 10.1186/2042-5783-2-6 | 2012 | ||
| Genetics | Plastic architecture of bacterial genome revealed by comparative genomics of Photorhabdus variants. | Gaudriault S, Pages S, Lanois A, Laroui C, Teyssier C, Jumas-Bilak E, Givaudan A. | Genome Biol | 10.1186/gb-2008-9-7-r117 | 2008 | |
| Antimicrobial and antioxidant activities of the extracts and compounds from the leaves of Psorospermum aurantiacum Engl. and Hypericum lanceolatum Lam. | Tchakam PD, Lunga PK, Kowa TK, Lonfouo AH, Wabo HK, Tapondjou LA, Tane P, Kuiate JR. | BMC Complement Altern Med | 10.1186/1472-6882-12-136 | 2012 | ||
| Metabolism | Systematic analysis of cyclic di-GMP signalling enzymes and their role in biofilm formation and virulence in Yersinia pestis. | Bobrov AG, Kirillina O, Ryjenkov DA, Waters CM, Price PA, Fetherston JD, Mack D, Goldman WE, Gomelsky M, Perry RD. | Mol Microbiol | 10.1111/j.1365-2958.2010.07470.x | 2011 | |
| Analysis of the Pseudoalteromonas tunicata genome reveals properties of a surface-associated life style in the marine environment. | Thomas T, Evans FF, Schleheck D, Mai-Prochnow A, Burke C, Penesyan A, Dalisay DS, Stelzer-Braid S, Saunders N, Johnson J, Ferriera S, Kjelleberg S, Egan S. | PLoS One | 10.1371/journal.pone.0003252 | 2008 | ||
| Distribution of genes encoding nucleoid-associated protein homologs in plasmids. | Takeda T, Yun CS, Shintani M, Yamane H, Nojiri H. | Int J Evol Biol | 10.4061/2011/685015 | 2011 | ||
| Metabolism | Characterization of the RNA degradosome of Pseudoalteromonas haloplanktis: conservation of the RNase E-RhlB interaction in the gammaproteobacteria. | Ait-Bara S, Carpousis AJ. | J Bacteriol | 10.1128/jb.00592-10 | 2010 | |
| Type IVB Secretion Systems of Legionella and Other Gram-Negative Bacteria. | Nagai H, Kubori T. | Front Microbiol | 10.3389/fmicb.2011.00136 | 2011 | ||
| A putative mobile genetic element carrying a novel type IIF restriction-modification system (PluTI). | Khan F, Furuta Y, Kawai M, Kaminska KH, Ishikawa K, Bujnicki JM, Kobayashi I. | Nucleic Acids Res | 10.1093/nar/gkp1221 | 2010 | ||
| Different region analysis for genotyping Yersinia pestis isolates from China. | Li Y, Dai E, Cui Y, Li M, Zhang Y, Wu M, Zhou D, Guo Z, Dai X, Cui B, Qi Z, Wang Z, Wang H, Dong X, Song Z, Zhai J, Song Y, Yang R. | PLoS One | 10.1371/journal.pone.0002166 | 2008 | ||
| Metabolism | Genetic and functional properties of the self-transmissible Yersinia enterocolitica plasmid pYE854, which mobilizes the virulence plasmid pYV. | Hammerl JA, Klein I, Lanka E, Appel B, Hertwig S. | J Bacteriol | 10.1128/jb.01467-07 | 2008 | |
| Genetics | A proteogenomic update to Yersinia: enhancing genome annotation. | Payne SH, Huang ST, Pieper R. | BMC Genomics | 10.1186/1471-2164-11-460 | 2010 | |
| In silico analysis of methyltransferase domains involved in biosynthesis of secondary metabolites. | Ansari MZ, Sharma J, Gokhale RS, Mohanty D. | BMC Bioinformatics | 10.1186/1471-2105-9-454 | 2008 | ||
| Genetics | Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042. | Chaudhuri RR, Sebaihia M, Hobman JL, Webber MA, Leyton DL, Goldberg MD, Cunningham AF, Scott-Tucker A, Ferguson PR, Thomas CM, Frankel G, Tang CM, Dudley EG, Roberts IS, Rasko DA, Pallen MJ, Parkhill J, Nataro JP, Thomson NR, Henderson IR. | PLoS One | 10.1371/journal.pone.0008801 | 2010 | |
| Genetics | Dark matter in a deep-sea vent and in human mouth. | Galperin MY. | Environ Microbiol | 10.1111/j.1462-2920.2007.01434.x | 2007 | |
| Pathogenicity | Comparison of three methods for testing azole susceptibilities of Candida albicans strains isolated sequentially from oral cavities of AIDS patients. | Tortorano AM, Viviani MA, Barchiesi F, Arzeni D, Rigoni AL, Cogliati M, Compagnucci P, Scalise G. | J Clin Microbiol | 10.1128/jcm.36.6.1578-1583.1998 | 1998 | |
| Genetics | Dynamics of genome rearrangement in bacterial populations. | Darling AE, Miklos I, Ragan MA. | PLoS Genet | 10.1371/journal.pgen.1000128 | 2008 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #122006 | Collection of Institut Pasteur ; Curators of the CIP; CIP 111962 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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