Yersinia pseudotuberculosis 71 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from lymphangitis in Bos indicus.
Gram-negative rod-shaped aerobe mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Yersiniaceae |
| Genus Yersinia |
| Species Yersinia pseudotuberculosis |
| Full scientific name Yersinia pseudotuberculosis (Pfeiffer 1889) Smith and Thal 1965 (Approved Lists 1980) |
| Synonyms (2) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 16567 | BHI MEDIUM (DSMZ Medium 215) | Medium recipe at MediaDive | Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water | ||
| 16567 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 40803 | MEDIUM 118 - for Pasteurella, Actinobacillus and Psychrobacter frigidicola | Distilled water make up to (1000.000 ml);Yeast extract (1.000 g);Tryptocasein soy agar (40.000 g) | |||
| 122004 | CIP Medium 118-b | Medium recipe at CIP |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 91.2 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68381 | 40585 ChEBI | alpha-cyclodextrin | - | builds acid from | from API rID32STR |
| 68381 | 29016 ChEBI | arginine | - | hydrolysis | from API rID32STR |
| 68381 | 18333 ChEBI | D-arabitol | - | builds acid from | from API rID32STR |
| 68377 | 15824 ChEBI | D-fructose | + | builds acid from | from API NH |
| 68377 | 17634 ChEBI | D-glucose | + | builds acid from | from API NH |
| 68381 | 16899 ChEBI | D-mannitol | + | builds acid from | from API rID32STR |
| 68381 | 16988 ChEBI | D-ribose | + | builds acid from | from API rID32STR |
| 68381 | 16443 ChEBI | D-tagatose | - | builds acid from | from API rID32STR |
| 68381 | 28087 ChEBI | glycogen | - | builds acid from | from API rID32STR |
| 68381 | 606565 ChEBI | hippurate | - | hydrolysis | from API rID32STR |
| 68381 | 30849 ChEBI | L-arabinose | - | builds acid from | from API rID32STR |
| 68381 | 17716 ChEBI | lactose | - | builds acid from | from API rID32STR |
| 68381 | 17306 ChEBI | maltose | + | builds acid from | from API rID32STR |
| 68381 | 6731 ChEBI | melezitose | - | builds acid from | from API rID32STR |
| 68381 | 28053 ChEBI | melibiose | + | builds acid from | from API rID32STR |
| 68381 | 320055 ChEBI | methyl beta-D-glucopyranoside | + | builds acid from | from API rID32STR |
| 122004 | 17632 ChEBI | nitrate | - | reduction | |
| 122004 | 16301 ChEBI | nitrite | - | reduction | |
| 68381 | 27941 ChEBI | pullulan | - | builds acid from | from API rID32STR |
| 68381 | 16634 ChEBI | raffinose | - | builds acid from | from API rID32STR |
| 68381 | 30911 ChEBI | sorbitol | - | builds acid from | from API rID32STR |
| 68381 | 17992 ChEBI | sucrose | - | builds acid from | from API rID32STR |
| 68377 | 17992 ChEBI | sucrose | - | builds acid from | from API NH |
| 68381 | 27082 ChEBI | trehalose | + | builds acid from | from API rID32STR |
| 68377 | 27897 ChEBI | tryptophan | - | energy source | from API NH |
| 68381 | 16199 ChEBI | urea | + | hydrolysis | from API rID32STR |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68381 | Alanyl-Phenylalanyl-Proline arylamidase | + | from API rID32STR | |
| 68381 | alkaline phosphatase | + | 3.1.3.1 | from API rID32STR |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68377 | alkaline phosphatase | - | 3.1.3.1 | from API NH |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68381 | alpha-galactosidase | + | 3.2.1.22 | from API rID32STR |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68381 | arginine dihydrolase | - | 3.5.3.6 | from API rID32STR |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 68381 | beta-galactosidase | - | 3.2.1.23 | from API rID32STR |
| 68381 | beta-glucosidase | + | 3.2.1.21 | from API rID32STR |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68381 | beta-glucuronidase | - | 3.2.1.31 | from API rID32STR |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68381 | beta-mannosidase | - | 3.2.1.25 | from API rID32STR |
| 122004 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 68381 | glycyl tryptophan arylamidase | + | from API rID32STR | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68377 | lipase | - | from API NH | |
| 68382 | lipase (C 14) | - | from API zym | |
| 68381 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API rID32STR |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 122004 | oxidase | - | ||
| 68377 | proline-arylamidase | + | 3.4.11.5 | from API NH |
| 68381 | pyrrolidonyl arylamidase | + | 3.4.19.3 | from API rID32STR |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 68377 | tryptophan deaminase | - | 4.1.99.1 | from API NH |
| 68381 | urease | + | 3.5.1.5 | from API rID32STR |
| 122004 | urease | + | 3.5.1.5 | |
| 68382 | valine arylamidase | - | from API zym |
| @ref | ADH (Arg) | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | Acid from alpha-cyclodextrinCDEX | Acetoin production (Voges Proskauer test)VP | Alanyl-Phenylalanyl-Proline arylamidaseAPPA | beta GAL | Pyrrolidonyl arylamidasePyrA | N-Acetyl-glucosaminidasebeta NAG | Glycyl-tryptophan arylamidaseGTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Acidification of methyl beta-D-glucopyranosideMbeta DG | TAG | beta MAN | URE | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16567 | - | + | - | - | + | + | + | + | - | - | + | - | - | - | - | - | - | + | - | + | - | + | - | - | - | + | + | - | + | - | - | + |
Global distribution of 16S sequence HF558372 (>99% sequence identity) for Yersiniaceae from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | 46338_D02 assembly for Yersinia pseudotuberculosis NCTC10547 | contig | 633 | 49.66 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 16567 | 49.7 | thermal denaturation, midpoint method (Tm) |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 91.20 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 54.70 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 71.20 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 59.20 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.25 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 97.69 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 89.78 | no |
| 125438 | aerobic | aerobicⓘ | no | 61.76 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.74 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 77.92 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Enzymology | Mycoplasma detection by triplex real-time PCR in bronchoalveolar lavage fluid from bovine respiratory disease complex cases. | Cornelissen JB, de Bree FM, van der Wal FJ, Kooi EA, Koene MG, Bossers A, Smid B, Antonis AF, Wisselink HJ. | BMC Vet Res | 10.1186/s12917-017-1023-6 | 2017 | |
| Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implication. | Collins MD, Jones D. | Microbiol Rev | 10.1128/mr.45.2.316-354.1981 | 1981 | ||
| Current Challenges in Yersinia Diagnosis and Treatment. | Grygiel-Gorniak B. | Microorganisms | 10.3390/microorganisms13051133 | 2025 | ||
| Pathogenicity | More's the Same-Multiple Hosts Do Not Select for Broader Host Range Phages. | Myers J, Davis Ii J, Lollo M, Hudec G, Hyman P. | Viruses | 10.3390/v15020518 | 2023 | |
| War on Rats: the architecture of the bubonic plague in Galveston. | Wang LK. | Proc (Bayl Univ Med Cent) | 10.1080/08998280.2023.2204289 | 2023 | ||
| Phylogeny | Proposed reclassification of Pasteurella lymphangitidis Sneath & Stevens 1990 as Yersinia pseudotuberculosis. | Gaillot O, Lemenand O, Marceau M, Simonet M. | Int J Syst Evol Microbiol | 10.1099/ijs.0.051524-0 | 2013 | |
| The P450 genes of the cat flea, Ctenocephalides felis: a CYPome in flux. | Feyereisen R. | Curr Res Insect Sci | 10.1016/j.cris.2022.100032 | 2022 | ||
| Enzymology | Production and characterization of monoclonal antibodies against YopM effector protein of Yersinia pestis. | Khushiramani R, Tuteja U, Shukla J, Batra HV. | Hybridoma (Larchmt) | 10.1089/hyb.2008.0032 | 2009 | |
| Enzymology | [Rapid method of isolation of lipid A from Yersinia pseudotuberculosis]. | Krasikova IN, Bakholdina SI, Solov'eva TF. | Bioorg Khim | 1999 | ||
| Metabolism | Unusual molecular architecture of the Yersinia pestis cytotoxin YopM: a leucine-rich repeat protein with the shortest repeating unit. | Evdokimov AG, Anderson DE, Routzahn KM, Waugh DS. | J Mol Biol | 10.1006/jmbi.2001.4973 | 2001 | |
| Targeting of the Yersinia pestis F1 capsular antigen by innate-like B1b cells mediates a rapid protective response against bubonic plague. | Levy Y, Vagima Y, Tidhar A, Aftalion M, Gur D, Nili U, Chitlaru T, Zauberman A, Mamroud E. | NPJ Vaccines | 10.1038/s41541-018-0087-z | 2018 | ||
| Phylogeny | The Changing Face of the Family Enterobacteriaceae (Order: "Enterobacterales"): New Members, Taxonomic Issues, Geographic Expansion, and New Diseases and Disease Syndromes. | Janda JM, Abbott SL. | Clin Microbiol Rev | 10.1128/cmr.00174-20 | 2021 | |
| Genetics | Paleogenomic insights into the red complex bacteria Tannerella forsythia in Pre-Hispanic and Colonial individuals from Mexico. | Bravo-Lopez M, Villa-Islas V, Rocha Arriaga C, Villasenor-Altamirano AB, Guzman-Solis A, Sandoval-Velasco M, Wesp JK, Alcantara K, Lopez-Corral A, Gomez-Valdes J, Mejia E, Herrera A, Meraz-Moreno A, Moreno-Cabrera ML, Moreno-Estrada A, Nieves-Colon MA, Olvera J, Perez-Perez J, Iversen KH, Rasmussen S, Sandoval K, Zepeda G, Avila-Arcos MC. | Philos Trans R Soc Lond B Biol Sci | 10.1098/rstb.2019.0580 | 2020 | |
| Super Secondary Structure Consisting of a Polyproline II Helix and a beta-Turn in Leucine Rich Repeats in Bacterial Type III Secretion System Effectors. | Batkhishig D, Bilguun K, Enkhbayar P, Miyashita H, Kretsinger RH, Matsushima N. | Protein J | 10.1007/s10930-018-9767-9 | 2018 | ||
| Pathogenicity | [Comparative study of the effect of antibiotics-aminoglycosides on pseudotuberculosis bacterium in vitro and in vivo]. | Ryzhko IV, Rogozina MI, Gurleva GG, Makarovskaia LN, Pun'ko TA. | Antibiotiki | 1976 | ||
| [Pseudotuberculosis in simians]. | Krylova RI, Dzhikidze EK, Machavariana MN. | Arkh Patol | 1976 | |||
| Pasteurella pestis: Role of Pesticin I and Iron in Experimental Plague. | Brubaker RR, Beesley ED, Surgalla MJ. | Science | 10.1126/science.149.3682.422 | 1965 | ||
| Enteral infection with Pasteurella pseudotuberculosis. | DANIELS JJ. | Br Med J | 10.1136/bmj.2.5258.997 | 1961 | ||
| A comparison of immunogenicity and protective immunity against experimental plague by intranasal and/or combined with oral immunization of mice with attenuated Salmonella serovar Typhimurium expressing secreted Yersinia pestis F1 and V antigen. | Liu WT, Hsu HL, Liang CC, Chuang CC, Lin HC, Liu YT. | FEMS Immunol Med Microbiol | 10.1111/j.1574-695x.2007.00280.x | 2007 | ||
| Pasteurella pseudotuberculosis antibody titres in man: a preliminary report. | HNATKO SI, RODIN AE. | Can Med Assoc J | 1962 | |||
| Pasteurella pseudotuberculosis infection in man. | HNATKO SI, RODIN AE. | Can Med Assoc J | 1963 | |||
| V and W antigens in strains of Pasteurella pseudotuberculosis. | BURROWS TW, BACON GA. | Br J Exp Pathol | 1960 | |||
| Pathogenicity | The Endotoxin of Pasteurella pseudotuberculosis. | Lazarus AS, Nozawa MM. | J Bacteriol | 10.1128/jb.56.2.187-190.1948 | 1948 | |
| Gene transfer in Pasteurella pestis harboring the F'Cm plasmid of Escherichia coli. | Lawton WD, Stull HB. | J Bacteriol | 10.1128/jb.110.3.926-929.1972 | 1972 | ||
| Three cases of acute mesenteric lymphadenitis due to Pasteurella pseudotuberculosis. | MAIR NS, MAIR HJ, STIRK EM, CORSON JG. | J Clin Pathol | 10.1136/jcp.13.5.432 | 1960 |
| #16567 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22972 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #40803 | ; Curators of the CIP; |
| #48676 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 27188 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68377 | Automatically annotated from API NH . |
| #68381 | Automatically annotated from API rID32STR . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #122004 | Collection of Institut Pasteur ; Curators of the CIP; CIP 103823 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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