Yersinia pseudotuberculosis CARE_00005 is a Gram-negative, motile, rod-shaped bacterium that was isolated from Human, Stools.
Gram-negative motile rod-shaped genome sequence Bacteria| @ref 20215 |
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Last LPSN update
2026-02-09 11:41:54 |
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Yersiniaceae |
| Genus Yersinia |
| Species Yersinia pseudotuberculosis |
| Full scientific name Yersinia pseudotuberculosis (Pfeiffer 1889) Smith and Thal 1965 (Approved Lists 1980) |
| Synonyms (2) |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 124043 | ASM4736v1 assembly for Yersinia pseudotuberculosis IP 32953 | complete | GCA_000047365   | 273123.10  | 637000355  | 273123 | 98.98 |  |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Development of a cost-effective LAMP method for screening and monitoring enteropathogenic Yersinia in environmental matrices. | Oumarou Hama H, Bitam I, Drancourt M. | Sci One Health | 10.1016/j.soh.2025.100133 | 2025 | | |
| Genetics | Whole genome sequencing of Yersinia pestis isolates from Central Asian natural plague foci revealed the role of adaptation to different hosts and environmental conditions in shaping specific genotypes. | Abdirassilova AA, Yessimseit DT, Kassenova AK, Abdeliyev BZ, Zhumadilova ZB, Tokmurziyeva GZ, Kovaleva GG, Abdel ZZ, Meka-Mechenko TV, Umarova SK, Begimbayeva EZ, Agzam SD, Motin VL, Reva ON, Rysbekova AK. | PLoS Negl Trop Dis | 10.1371/journal.pntd.0013533 | 2025 | |
| Phylogeny | Evaluation of 16S rRNA genes sequences and genome-based analysis for identification of non-pathogenic Yersinia. | Kislichkina AA, Sizova AA, Skryabin YP, Dentovskaya SV, Anisimov AP. | Front Microbiol | 10.3389/fmicb.2024.1519733 | 2024 | |
| Identification and characterization of two CRISPR/Cas systems associated with the mosquito microbiome. | Hegde S, Rauch HE, Hughes GL, Shariat N. | Access Microbiol | 10.1099/acmi.0.000599.v4 | 2023 | | |
| Subcutaneous vaccination with a live attenuated Yersinia pseudotuberculosis plague vaccine. | Derbise A, Guillas C, Gerke C, Carniel E, Pizarro-Cerda J, Demeure CE. | Vaccine | 10.1016/j.vaccine.2020.01.014 | 2020 | | |
| Humoral and cellular immune correlates of protection against bubonic plague by a live Yersinia pseudotuberculosis vaccine. | Demeure CE, Derbise A, Guillas C, Gerke C, Cauchemez S, Carniel E, Pizarro-Cerda J. | Vaccine | 10.1016/j.vaccine.2018.11.022 | 2019 | | |
| Genetics | The intricate relationship of G-Quadruplexes and bacterial pathogenicity islands. | Lyu B, Song Q. | Elife | 10.7554/elife.91985 | 2024 | |
| Genetics | Yersinia pseudotuberculosis Prevalence and Diversity in Wild Boars in Northeast Germany. | Reinhardt M, Hammerl JA, Kunz K, Barac A, Nockler K, Hertwig S. | Appl Environ Microbiol | 10.1128/aem.00675-18 | 2018 | |
| S51 Family Peptidases Provide Resistance to Peptidyl-Nucleotide Antibiotic McC. | Yagmurov E, Gilep K, Serebryakova M, Wolf YI, Dubiley S, Severinov K. | mBio | 10.1128/mbio.00805-22 | 2022 | | |
| Metabolism | Role of DEAD-box RNA helicase genes in the growth of Yersinia pseudotuberculosis IP32953 under cold, pH, osmotic, ethanol and oxidative stresses. | Jiang X, Keto-Timonen R, Skurnik M, Korkeala H. | PLoS One | 10.1371/journal.pone.0219422 | 2019 | |
| A Novel Deoxyribonuclease Low-Molecular-Weight Bacteriocin, Carocin S4, from Pectobacterium carotovorum subsp. carotovorum. | Wu HP, Derilo RC, Hsu SH, Hu JM, Chuang DY. | Microorganisms | 10.3390/microorganisms11071854 | 2023 | | |
| Lipopolysaccharide of the Yersinia pseudotuberculosis Complex. | Knirel YA, Anisimov AP, Kislichkina AA, Kondakova AN, Bystrova OV, Vagaiskaya AS, Shatalin KY, Shashkov AS, Dentovskaya SV. | Biomolecules | 10.3390/biom11101410 | 2021 | | |
| Metabolism | Changes in Transcriptome of Yersinia pseudotuberculosis IP32953 Grown at 3 and 28°C Detected by RNA Sequencing Shed Light on Cold Adaptation. | Virtanen JP, Keto-Timonen R, Jaakkola K, Salin N, Korkeala H. | Front Cell Infect Microbiol | 10.3389/fcimb.2018.00416 | 2018 | |
| Improving the extraction of ancient Yersinia pestis genomes from the dental pulp. | Clavel P, Louis L, Sarkissian C, Theves C, Gillet C, Chauvey L, Tressieres G, Schiavinato S, Calviere-Tonasso L, Telmon N, Clavel B, Jonvel R, Tzortzis S, Bouniol L, Femolant JM, Klunk J, Poinar H, Signoli M, Costedoat C, Spyrou MA, Seguin-Orlando A, Orlando L. | iScience | 10.1016/j.isci.2023.106787 | 2023 | | |
| A Peroxide-Responding sRNA Evolved from a Peroxidase mRNA. | Krieger MC, Dutcher HA, Ashford AJ, Raghavan R. | Mol Biol Evol | 10.1093/molbev/msac020 | 2022 | | |
| Lipopolysaccharide Biosynthesis Genes of Yersinia pseudotuberculosis Promote Resistance to Antimicrobial Chemokines. | Erickson DL, Lew CS, Kartchner B, Porter NT, McDaniel SW, Jones NM, Mason S, Wu E, Wilson E. | PLoS One | 10.1371/journal.pone.0157092 | 2016 | | |
| Enzymology | Creation of a producent, optimization of expression, and purification of recombinant Yersinia pseudotuberculosis L-asparaginase. | Sidoruk KV, Pokrovsky VS, Borisova AA, Omeljanuk NM, Aleksandrova SS, Pokrovskaya MV, Gladilina JA, Bogush VG, Sokolov NN. | Bull Exp Biol Med | 10.1007/s10517-011-1493-7 | 2011 | |
| Metabolism | Insights into the Phylogeny and Evolution of Cold Shock Proteins: From Enteropathogenic Yersinia and Escherichia coli to Eubacteria. | Yu T, Keto-Timonen R, Jiang X, Virtanen JP, Korkeala H. | Int J Mol Sci | 10.3390/ijms20164059 | 2019 | |
| The complex genomic diversity of Yersinia pestis on the long-term plague foci in Qinghai-Tibet plateau. | Liang J, Duan R, Qin S, Lv D, He Z, Zhang H, Duan Q, Xi J, Chun H, Fu G, Zheng X, Tang D, Wu W, Han H, Jing H, Wang X. | Ecol Evol | 10.1002/ece3.10387 | 2023 | | |
| Interplay between the RNA Chaperone Hfq, Small RNAs and Transcriptional Regulator OmpR Modulates Iron Homeostasis in the Enteropathogen Yersinia enterocolitica. | Jaworska K, Konarska J, Gomza P, Rozen P, Nieckarz M, Krawczyk-Balska A, Brzostek K, Raczkowska A. | Int J Mol Sci | 10.3390/ijms241311157 | 2023 | | |
| Yersinia pseudotuberculosis IP32953 survives and replicates in trophozoites and persists in cysts of Acanthamoeba castellanii. | Santos-Montanez J, Benavides-Montano JA, Hinz AK, Vadyvaloo V. | FEMS Microbiol Lett | 10.1093/femsle/fnv091 | 2015 | | |
| Integrative approach using Yersinia pestis genomes to revisit the historical landscape of plague during the Medieval Period. | Namouchi A, Guellil M, Kersten O, Hansch S, Ottoni C, Schmid BV, Pacciani E, Quaglia L, Vermunt M, Bauer EL, Derrick M, Jensen AO, Kacki S, Cohn SK, Stenseth NC, Bramanti B. | Proc Natl Acad Sci U S A | 10.1073/pnas.1812865115 | 2018 | | |
| Transcriptome | DualSeqDB: the host-pathogen dual RNA sequencing database for infection processes. | Macho Rendon J, Lang B, Ramos Llorens M, Gaetano Tartaglia G, Torrent Burgas M. | Nucleic Acids Res | 10.1093/nar/gkaa890 | 2021 | |
| Genetics | Small RNA identification in Enterobacteriaceae using synteny and genomic backbone retention II. | Sridhar J, Kumar SS, Rafi ZA. | OMICS | 10.1089/omi.2008.0067 | 2009 | |
| Metabolism | The small RNA chaperone Hfq is required for the virulence of Yersinia pseudotuberculosis. | Schiano CA, Bellows LE, Lathem WW. | Infect Immun | 10.1128/iai.01046-09 | 2010 | |
| LcrQ blocks the role of LcrF in regulating the Ysc-Yop type III secretion genes in Yersinia pseudotuberculosis. | Li L, Yan H, Feng L, Li Y, Lu P, Hu Y, Chen S. | PLoS One | 10.1371/journal.pone.0092243 | 2014 | | |
| Phylogeny | Novel genomic tools for specific and real-time detection of biothreat and frequently encountered foodborne pathogens. | Woubit A, Yehualaeshet T, Habtemariam T, Samuel T. | J Food Prot | 10.4315/0362-028x.jfp-11-480 | 2012 | |
| Enzymology | Requirement for RNA helicase CsdA for growth of Yersinia pseudotuberculosis IP32953 at low temperatures. | Palonen E, Lindstrom M, Somervuo P, Johansson P, Bjorkroth J, Korkeala H. | Appl Environ Microbiol | 10.1128/aem.07278-11 | 2012 | |
| Pathogenicity | Klebsazolicin inhibits 70S ribosome by obstructing the peptide exit tunnel. | Metelev M, Osterman IA, Ghilarov D, Khabibullina NF, Yakimov A, Shabalin K, Utkina I, Travin DY, Komarova ES, Serebryakova M, Artamonova T, Khodorkovskii M, Konevega AL, Sergiev PV, Severinov K, Polikanov YS. | Nat Chem Biol | 10.1038/nchembio.2462 | 2017 | |
| Expression of signal transduction system encoding genes of Yersinia pseudotuberculosis IP32953 at 28°C and 3°C. | Palonen E, Lindstrom M, Karttunen R, Somervuo P, Korkeala H. | PLoS One | 10.1371/journal.pone.0025063 | 2011 | | |
| Metabolism | Structure and function of the D-galactose network in enterobacteria. | Csiszovszki Z, Krishna S, Orosz L, Adhya S, Semsey S. | mBio | 10.1128/mbio.00053-11 | 2011 | |
| Metabolism | Flagella from five Cronobacter species induce pro-inflammatory cytokines in macrophage derivatives from human monocytes. | Cruz-Cordova A, Rocha-Ramirez LM, Ochoa SA, Gonzalez-Pedrajo B, Espinosa N, Eslava C, Hernandez-Chinas U, Mendoza-Hernandez G, Rodriguez-Leviz A, Valencia-Mayoral P, Sadowinski-Pine S, Hernandez-Castro R, Estrada-Garcia I, Munoz-Hernandez O, Rosas I, Xicohtencatl-Cortes J. | PLoS One | 10.1371/journal.pone.0052091 | 2012 | |
| Enzymatic synthesis of bioinformatically predicted microcin C-like compounds encoded by diverse bacteria. | Bantysh O, Serebryakova M, Makarova KS, Dubiley S, Datsenko KA, Severinov K. | mBio | 10.1128/mbio.01059-14 | 2014 | | |
| Enzymology | The omptins of Yersinia pestis and Salmonella enterica cleave the reactive center loop of plasminogen activator inhibitor 1. | Haiko J, Laakkonen L, Juuti K, Kalkkinen N, Korhonen TK. | J Bacteriol | 10.1128/jb.00458-10 | 2010 | |
| IscR is essential for yersinia pseudotuberculosis type III secretion and virulence. | Miller HK, Kwuan L, Schwiesow L, Bernick DL, Mettert E, Ramirez HA, Ragle JM, Chan PP, Kiley PJ, Lowe TM, Auerbuch V. | PLoS Pathog | 10.1371/journal.ppat.1004194 | 2014 | | |
| Genetics | YersiniaBase: a genomic resource and analysis platform for comparative analysis of Yersinia. | Tan SY, Dutta A, Jakubovics NS, Ang MY, Siow CC, Mutha NV, Heydari H, Wee WY, Wong GJ, Choo SW. | BMC Bioinformatics | 10.1186/s12859-014-0422-y | 2015 | |
| Metabolism | ExtraTrain: a database of Extragenic regions and Transcriptional information in prokaryotic organisms. | Pareja E, Pareja-Tobes P, Manrique M, Pareja-Tobes E, Bonal J, Tobes R. | BMC Microbiol | 10.1186/1471-2180-6-29 | 2006 | |
| Biofilm development on Caenorhabditis elegans by Yersinia is facilitated by quorum sensing-dependent repression of type III secretion. | Atkinson S, Goldstone RJ, Joshua GW, Chang CY, Patrick HL, Camara M, Wren BW, Williams P. | PLoS Pathog | 10.1371/journal.ppat.1001250 | 2011 | | |
| H-NS Nucleoid Protein Controls Virulence Features of Klebsiella pneumoniae by Regulating the Expression of Type 3 Pili and the Capsule Polysaccharide. | Ares MA, Fernandez-Vazquez JL, Rosales-Reyes R, Jarillo-Quijada MD, von Bargen K, Torres J, Gonzalez-y-Merchand JA, Alcantar-Curiel MD, De la Cruz MA. | Front Cell Infect Microbiol | 10.3389/fcimb.2016.00013 | 2016 | | |
| Phylogeography of the second plague pandemic revealed through analysis of historical Yersinia pestis genomes. | Spyrou MA, Keller M, Tukhbatova RI, Scheib CL, Nelson EA, Andrades Valtuena A, Neumann GU, Walker D, Alterauge A, Carty N, Cessford C, Fetz H, Gourvennec M, Hartle R, Henderson M, von Heyking K, Inskip SA, Kacki S, Key FM, Knox EL, Later C, Maheshwari-Aplin P, Peters J, Robb JE, Schreiber J, Kivisild T, Castex D, Losch S, Harbeck M, Herbig A, Bos KI, Krause J. | Nat Commun | 10.1038/s41467-019-12154-0 | 2019 | | |
| Genetics | Using Mahalanobis distance to compare genomic signatures between bacterial plasmids and chromosomes. | Suzuki H, Sota M, Brown CJ, Top EM. | Nucleic Acids Res | 10.1093/nar/gkn753 | 2008 | |
| Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis. | Cui Y, Yu C, Yan Y, Li D, Li Y, Jombart T, Weinert LA, Wang Z, Guo Z, Xu L, Zhang Y, Zheng H, Qin N, Xiao X, Wu M, Wang X, Zhou D, Qi Z, Du Z, Wu H, Yang X, Cao H, Wang H, Wang J, Yao S, Rakin A, Li Y, Falush D, Balloux F, Achtman M, Song Y, Wang J, Yang R. | Proc Natl Acad Sci U S A | 10.1073/pnas.1205750110 | 2013 | | |
| Metabolism | A selC-associated genomic island of the extraintestinal avian pathogenic Escherichia coli strain BEN2908 is involved in carbohydrate uptake and virulence. | Chouikha I, Germon P, Bree A, Gilot P, Moulin-Schouleur M, Schouler C. | J Bacteriol | 10.1128/jb.188.3.977-987.2006 | 2006 | |
| Enzymology | EnzymeDetector: an integrated enzyme function prediction tool and database. | Quester S, Schomburg D. | BMC Bioinformatics | 10.1186/1471-2105-12-376 | 2011 | |
| Transcriptome | Prediction of bacterial E3 ubiquitin ligase effectors using reduced amino acid peptide fingerprinting. | McDermott JE, Cort JR, Nakayasu ES, Pruneda JN, Overall C, Adkins JN. | PeerJ | 10.7717/peerj.7055 | 2019 | |
| Genomic and Biochemical Analysis of the Diaminopimelate and Lysine Biosynthesis Pathway in Verrucomicrobium spinosum: Identification and Partial Characterization of L,L-Diaminopimelate Aminotransferase and UDP-N-Acetylmuramoylalanyl-D-glutamyl-2,6-meso-Diaminopimelate Ligase. | Nachar VR, Savka FC, McGroty SE, Donovan KA, North RA, Dobson RC, Buckley LJ, Hudson AO. | Front Microbiol | 10.3389/fmicb.2012.00183 | 2012 | | |
| Genomes of the most dangerous epidemic bacteria have a virulence repertoire characterized by fewer genes but more toxin-antitoxin modules. | Georgiades K, Raoult D. | PLoS One | 10.1371/journal.pone.0017962 | 2011 | | |
| Genetics | Comparative genomics evidence that only protein toxins are tagging bad bugs. | Georgiades K, Raoult D. | Front Cell Infect Microbiol | 10.3389/fcimb.2011.00007 | 2011 | |
| Phosphate limitation induces the intergeneric inhibition of Pseudomonas aeruginosa by Serratia marcescens isolated from paper machines. | Kuo PA, Kuo CH, Lai YK, Graumann PL, Tu J. | FEMS Microbiol Ecol | 10.1111/1574-6941.12086 | 2013 | | |
| Aminoacyl-tRNA Synthetases as Valuable Targets for Antimicrobial Drug Discovery. | Pang L, Weeks SD, Van Aerschot A. | Int J Mol Sci | 10.3390/ijms22041750 | 2021 | | |
| Burkholderia cenocepacia utilizes a type VI secretion system for bacterial competition. | Spiewak HL, Shastri S, Zhang L, Schwager S, Eberl L, Vergunst AC, Thomas MS. | Microbiologyopen | 10.1002/mbo3.774 | 2019 | | |
| Metabolism | A functional VipA-VipB interaction is required for the type VI secretion system activity of Vibrio cholerae O1 strain A1552. | Broms JE, Ishikawa T, Wai SN, Sjostedt A. | BMC Microbiol | 10.1186/1471-2180-13-96 | 2013 | |
| Metabolism | Yersinia pestis Ail: multiple roles of a single protein. | Kolodziejek AM, Hovde CJ, Minnich SA. | Front Cell Infect Microbiol | 10.3389/fcimb.2012.00103 | 2012 | |
| Pathogenicity | Host-dependent Induction of Transient Antibiotic Resistance: A Prelude to Treatment Failure. | Kubicek-Sutherland JZ, Heithoff DM, Ersoy SC, Shimp WR, House JK, Marth JD, Smith JW, Mahan MJ. | EBioMedicine | 10.1016/j.ebiom.2015.08.012 | 2015 | |
| Crystal structures of the outer membrane domain of intimin and invasin from enterohemorrhagic E. coli and enteropathogenic Y. pseudotuberculosis. | Fairman JW, Dautin N, Wojtowicz D, Liu W, Noinaj N, Barnard TJ, Udho E, Przytycka TM, Cherezov V, Buchanan SK. | Structure | 10.1016/j.str.2012.04.011 | 2012 | | |
| Phylogeny | Early divergent strains of Yersinia pestis in Eurasia 5,000 years ago. | Rasmussen S, Allentoft ME, Nielsen K, Orlando L, Sikora M, Sjogren KG, Pedersen AG, Schubert M, Van Dam A, Kapel CM, Nielsen HB, Brunak S, Avetisyan P, Epimakhov A, Khalyapin MV, Gnuni A, Kriiska A, Lasak I, Metspalu M, Moiseyev V, Gromov A, Pokutta D, Saag L, Varul L, Yepiskoposyan L, Sicheritz-Ponten T, Foley RA, Lahr MM, Nielsen R, Kristiansen K, Willerslev E. | Cell | 10.1016/j.cell.2015.10.009 | 2015 | |
| The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats. | Grissa I, Vergnaud G, Pourcel C. | BMC Bioinformatics | 10.1186/1471-2105-8-172 | 2007 | | |
| Metabolism | Characterization of a new bacteriocin, Carocin D, from Pectobacterium carotovorum subsp. carotovorum Pcc21. | Roh E, Park TH, Kim MI, Lee S, Ryu S, Oh CS, Rhee S, Kim DH, Park BS, Heu S. | Appl Environ Microbiol | 10.1128/aem.03103-09 | 2010 | |
| Metabolism | Computational predictions of the mutant behavior of AraC. | Berrondo M, Gray JJ, Schleif R. | J Mol Biol | 10.1016/j.jmb.2010.03.021 | 2010 | |
| Outer membrane protein genes and their small non-coding RNA regulator genes in Photorhabdus luminescens. | Papamichail D, Delihas N. | Biol Direct | 10.1186/1745-6150-1-12 | 2006 | | |
| Genetics | Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria. | Glasner JD, Plunkett G, Anderson BD, Baumler DJ, Biehl BS, Burland V, Cabot EL, Darling AE, Mau B, Neeno-Eckwall EC, Pot D, Qiu Y, Rissman AI, Worzella S, Zaremba S, Fedorko J, Hampton T, Liss P, Rusch M, Shaker M, Shaull L, Shetty P, Thotakura S, Whitmore J, Blattner FR, Greene JM, Perna NT. | Nucleic Acids Res | 10.1093/nar/gkm973 | 2008 | |
| Metabolism | Yersinia Type III Secretion System Master Regulator LcrF. | Schwiesow L, Lam H, Dersch P, Auerbuch V. | J Bacteriol | 10.1128/jb.00686-15 | 2015 | |
| Bacterial phylogenetic tree construction based on genomic translation stop signals. | Xu L, Kuo J, Liu JK, Wong TY. | Microb Inform Exp | 10.1186/2042-5783-2-6 | 2012 | | |
| Enzymology | Two-Component-System Histidine Kinases Involved in Growth of Listeria monocytogenes EGD-e at Low Temperatures. | Pontinen A, Markkula A, Lindstrom M, Korkeala H. | Appl Environ Microbiol | 10.1128/aem.00626-15 | 2015 | |
| A computational method to predict genetically encoded rare amino acids in proteins. | Chaudhuri BN, Yeates TO. | Genome Biol | 10.1186/gb-2005-6-9-r79 | 2005 | | |
| The Xenorhabdus nematophila nilABC genes confer the ability of Xenorhabdus spp. to colonize Steinernema carpocapsae nematodes. | Cowles CE, Goodrich-Blair H. | J Bacteriol | 10.1128/jb.00123-08 | 2008 | | |
| Pathogenicity | Identification and characterization of a novel gene involved in the trans-specific nematicidal activity of Photorhabdus luminescens LN2. | Qiu X, Han R, Yan X, Liu M, Cao L, Yoshiga T, Kondo E. | Appl Environ Microbiol | 10.1128/aem.02967-08 | 2009 | |
| Metabolism | Systematic analysis of cyclic di-GMP signalling enzymes and their role in biofilm formation and virulence in Yersinia pestis. | Bobrov AG, Kirillina O, Ryjenkov DA, Waters CM, Price PA, Fetherston JD, Mack D, Goldman WE, Gomelsky M, Perry RD. | Mol Microbiol | 10.1111/j.1365-2958.2010.07470.x | 2011 | |
| Cooperation is fleeting in the world of transposable elements. | Wagner A. | PLoS Comput Biol | 10.1371/journal.pcbi.0020162 | 2006 | | |
| Separated at birth? Microarray analysis of two strikingly similar yersinia species. | Hinchliffe SJ, Isherwood KE, Stabler RA, Oyston PC, Hinds J, Titbal RW, Wren BW. | Comp Funct Genomics | 10.1002/cfg.195 | 2002 | | |
| Metabolism | Hierarchy of iron uptake systems: Yfu and Yiu are functional in Yersinia pestis. | Kirillina O, Bobrov AG, Fetherston JD, Perry RD. | Infect Immun | 10.1128/iai.00874-06 | 2006 | |
| Genetics | ASAP: a resource for annotating, curating, comparing, and disseminating genomic data. | Glasner JD, Rusch M, Liss P, Plunkett G, Cabot EL, Darling A, Anderson BD, Infield-Harm P, Gilson MC, Perna NT. | Nucleic Acids Res | 10.1093/nar/gkj164 | 2006 | |
| Phylogeny | Enzymatic, immunological and phylogenetic characterization of Brucella suis urease. | Contreras-Rodriguez A, Quiroz-Limon J, Martins AM, Martins AM, Peralta H, Avila-Calderon E, Sriranganathan N, Boyle SM, Lopez-Merino A. | BMC Microbiol | 10.1186/1471-2180-8-121 | 2008 | |
| Genetics | Plastic architecture of bacterial genome revealed by comparative genomics of Photorhabdus variants. | Gaudriault S, Pages S, Lanois A, Laroui C, Teyssier C, Jumas-Bilak E, Givaudan A. | Genome Biol | 10.1186/gb-2008-9-7-r117 | 2008 | |
| Metabolism | Simple sequence repeats in prokaryotic genomes. | Mrazek J, Guo X, Shah A. | Proc Natl Acad Sci U S A | 10.1073/pnas.0702412104 | 2007 | |
| Proteome | Broad-host-range Yersinia phage PY100: genome sequence, proteome analysis of virions, and DNA packaging strategy. | Schwudke D, Ergin A, Michael K, Volkmar S, Appel B, Knabner D, Konietzny A, Strauch E. | J Bacteriol | 10.1128/jb.01402-07 | 2008 | |
| Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12. | Sun J, Tuncay K, Haidar AA, Ensman L, Stanley F, Trelinski M, Ortoleva P. | Algorithms Mol Biol | 10.1186/1748-7188-2-2 | 2007 | | |
| Genetics | Ancient Yersinia pestis genomes from across Western Europe reveal early diversification during the First Pandemic (541-750). | Keller M, Spyrou MA, Scheib CL, Neumann GU, Kropelin A, Haas-Gebhard B, Paffgen B, Haberstroh J, Ribera I Lacomba A, Raynaud C, Cessford C, Durand R, Stadler P, Nagele K, Bates JS, Trautmann B, Inskip SA, Peters J, Robb JE, Kivisild T, Castex D, McCormick M, Bos KI, Harbeck M, Herbig A, Krause J. | Proc Natl Acad Sci U S A | 10.1073/pnas.1820447116 | 2019 | |
| Enzymology | A high-throughput pipeline for designing microarray-based pathogen diagnostic assays. | Vijaya Satya R, Zavaljevski N, Kumar K, Reifman J. | BMC Bioinformatics | 10.1186/1471-2105-9-185 | 2008 | |
| Metabolism | A novel cdsAB operon is involved in the uptake of L-cysteine and participates in the pathogenesis of Yersinia ruckeri. | Mendez J, Reimundo P, Perez-Pascual D, Navais R, Gomez E, Guijarro JA. | J Bacteriol | 10.1128/jb.01058-10 | 2011 | |
| Metabolism | Protein-translocating trimeric autotransporters of gram-negative bacteria. | Kim DS, Chao Y, Saier MH. | J Bacteriol | 10.1128/jb.01596-05 | 2006 | |
| A putative mobile genetic element carrying a novel type IIF restriction-modification system (PluTI). | Khan F, Furuta Y, Kawai M, Kaminska KH, Ishikawa K, Bujnicki JM, Kobayashi I. | Nucleic Acids Res | 10.1093/nar/gkp1221 | 2010 | | |
| Metabolism | Bacterial heme-transport proteins and their heme-coordination modes. | Tong Y, Guo M. | Arch Biochem Biophys | 10.1016/j.abb.2008.10.013 | 2009 | |
| Pathogenicity | The main virulence determinant of Yersinia entomophaga MH96 is a broad-host-range toxin complex active against insects. | Hurst MR, Jones SA, Binglin T, Harper LA, Jackson TA, Glare TR. | J Bacteriol | 10.1128/jb.01044-10 | 2011 | |
| Phylogenetic structure and evolution of regulatory genes and integrases of P2-like phages. | Nilsson H, Cardoso-Palacios C, Haggard-Ljungquist E, Nilsson AS. | Bacteriophage | 10.4161/bact.1.4.18470 | 2011 | | |
| Genetics | The GC skew index: a measure of genomic compositional asymmetry and the degree of replicational selection. | Arakawa K, Tomita M. | Evol Bioinform Online | 2007 | | |
| Yersinia pestis caf1 variants and the limits of plague vaccine protection. | Quenee LE, Cornelius CA, Ciletti NA, Elli D, Schneewind O. | Infect Immun | 10.1128/iai.00105-08 | 2008 | | |
| Short and long-term genome stability analysis of prokaryotic genomes. | Brilli M, Lio P, Lacroix V, Sagot MF. | BMC Genomics | 10.1186/1471-2164-14-309 | 2013 | | |
| Different region analysis for genotyping Yersinia pestis isolates from China. | Li Y, Dai E, Cui Y, Li M, Zhang Y, Wu M, Zhou D, Guo Z, Dai X, Cui B, Qi Z, Wang Z, Wang H, Dong X, Song Z, Zhai J, Song Y, Yang R. | PLoS One | 10.1371/journal.pone.0002166 | 2008 | | |
| Metabolism | Insights into the evolution of sialic acid catabolism among bacteria. | Almagro-Moreno S, Boyd EF. | BMC Evol Biol | 10.1186/1471-2148-9-118 | 2009 | |
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How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive173506.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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