Yersinia pseudotuberculosis (DSM 8992, ATCC 29833, CIP 55.85)

Name: Yersinia pseudotuberculosis (DSM 8992, ATCC 29833, CIP 55.85)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5216

Type strain

Strain Designation 14

Culture col. no. DSM 8992 ATCC 29833 CIP 55.85 NCTC 10275 CCUG 5855 3 more

NCBI tax ID(s) 1218101 633

Special Collections DSMZ CCUG JCM CIP

History DSMZ <- ATCC <- NCTC (Yersinia rodentium) <- E. Thal JCM <-- R. Sakazaki 22176 <-- NCTC 10275 <-- E. Thal. CIP <- 1955, G. Girard, Inst. Pasteur, Paris, France, Yersinia rodentium <- E. Thal, Stockholm, Sweden: strain 14

Links

Yersinia pseudotuberculosis 14 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from turkey.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 389426

NBRC 105692,ATCC 29833,NCTC 10275,CCUG 5855,DSM 8992,CIP 55.85,JCM 1676

@ref 20215

Last LPSN update 2026-05-29 08:26:07

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Yersiniaceae

Genus Yersinia

Species Yersinia pseudotuberculosis

Full scientific name Yersinia pseudotuberculosis (Pfeiffer 1889) Smith and Thal 1965 (Approved Lists 1980)

Synonyms (2)

"Bacillus pseudotuberkulosis"
Pasteurella lymphangitidis

BacDive ID	Other strains from **Yersinia pseudotuberculosis** (38)	Type strain
11743	Y. pseudotuberculosis 71, A82, I, CNP 14, DSM 22972, ATCC 49635, ...
135167	Y. pseudotuberculosis Prud'homme, CIP A119
135902	Y. pseudotuberculosis CIP 104897, CNY 33054
136976	Y. pseudotuberculosis 16, CIP 55.86
136982	Y. pseudotuberculosis 43, CIP 55.87, NCTC 9508
136988	Y. pseudotuberculosis 25, CIP 55.88, NCTC 8579
136993	Y. pseudotuberculosis 32, CIP 55.89, ATCC 13979, NCTC 8580
138109	Y. pseudotuberculosis CIP 104896, CNY 33053
138857	Y. pseudotuberculosis CIP A120
139464	Y. pseudotuberculosis CIP A1
141221	Y. pseudotuberculosis CCUG 242
141222	Y. pseudotuberculosis CCUG 243
141223	Y. pseudotuberculosis CCUG 244
141224	Y. pseudotuberculosis CCUG 245
141225	Y. pseudotuberculosis CCUG 246 B
141734	Y. pseudotuberculosis CCUG 5854, ATCC 6902, NCTC 1102
141854	Y. pseudotuberculosis CCUG 7803
142828	Y. pseudotuberculosis CCUG 15132
143131	Y. pseudotuberculosis CCUG 17342
143132	Y. pseudotuberculosis CCUG 17344
143133	Y. pseudotuberculosis CCUG 17345
144311	Y. pseudotuberculosis CCUG 24522
144347	Y. pseudotuberculosis CCUG 24690
144878	Y. pseudotuberculosis CCUG 26948
149039	Y. pseudotuberculosis CCUG 36765
149523	Y. pseudotuberculosis CCUG 37902
149524	Y. pseudotuberculosis CCUG 37903
154569	Y. pseudotuberculosis CCUG 54446
154570	Y. pseudotuberculosis CCUG 54447
154571	Y. pseudotuberculosis CCUG 54448
154572	Y. pseudotuberculosis CCUG 54449
154573	Y. pseudotuberculosis CCUG 54450
156179	Y. pseudotuberculosis CCUG 60634
173506	Y. pseudotuberculosis CARE_00005, CIP 111961, IP 32953
173507	Y. pseudotuberculosis CARE_00006, CIP 111962, IP 31758
173508	Y. pseudotuberculosis CARE_00018, CIP 111974, IP 33304
173509	Y. pseudotuberculosis CARE_00019, CIP 111975, IP 34654
173510	Y. pseudotuberculosis CARE_00020, CIP 111976, IP 33620

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
122003	negative	rod-shaped
125438	negative			99.75

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
3456	BHI MEDIUM (DSMZ Medium 215)	Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
38377	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
122003	CIP Medium 72	Medium recipe at CIP
3456	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
3456	positive	growth	37
38377	positive	growth	30
44861	positive	growth	30-37
67770	positive	growth	37
122003	positive	growth	5-41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
44861	aerobe
122003	facultative anaerobe
125439	facultative anaerobe	90.457

Spore formation

@ref	Spore formation	Confidence
125438		90.284
125439		96.344

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
122003	16947 ChEBI	citrate	-	carbon source
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	+	builds acid from	from API 50CH acid
68377	15824 ChEBI	D-fructose	+	builds acid from	from API NH
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68377	17634 ChEBI	D-glucose	+	builds acid from	from API NH
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
122003	17234 ChEBI	glucose	+	fermentation
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68368	30849 ChEBI	L-arabinose	-	fermentation	from API 20E
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	+	builds acid from	from API 50CH acid
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
122003	17716 ChEBI	lactose	-	fermentation
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68368	25094 ChEBI	lysine	-	degradation	from API 20E
122003	15792 ChEBI	malonate	-	assimilation
68377	17306 ChEBI	maltose	-	builds acid from	from API NH
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
122003	29864 ChEBI	mannitol	+	fermentation
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68368	28053 ChEBI	melibiose	+	fermentation	from API 20E
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
122003	17632 ChEBI	nitrate	+	reduction
122003	16301 ChEBI	nitrite	-	reduction
68377	18257 ChEBI	ornithine	-	degradation	from API NH
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
122003	132112 ChEBI	sodium thiosulfate	-	builds gas from
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68377	17992 ChEBI	sucrose	-	builds acid from	from API NH
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68377	27897 ChEBI	tryptophan	-	energy source	from API NH
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68377	16199 ChEBI	urea	+	hydrolysis	from API NH
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
122003	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68377	35581 ChEBI	indole	from API NH
122003	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
122003	15688 ChEBI	acetoin	-
68368	15688 ChEBI	acetoin	-			from API 20E
122003	17234 ChEBI	glucose		-
68377	35581 ChEBI	indole			-	from API NH
68368	35581 ChEBI	indole			-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
122003	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68377	alkaline phosphatase	-	3.1.3.1	from API NH
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68382	beta-galactosidase	+	3.2.1.23	from API zym
122003	beta-galactosidase	+	3.2.1.23
68377	beta-galactosidase	+	3.2.1.23	from API NH
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68377	beta-lactamase	-	3.5.2.6	from API NH
122003	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68382	esterase (C 4)	+		from API zym
68377	gamma-glutamyltransferase	+	2.3.2.2	from API NH
122003	gelatinase	-
68368	gelatinase	-		from API 20E
68382	leucine arylamidase	+	3.4.11.1	from API zym
68377	lipase	-		from API NH
68382	lipase (C 14)	-		from API zym
122003	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122003	ornithine decarboxylase	-	4.1.1.17
68377	ornithine decarboxylase	-	4.1.1.17	from API NH
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
122003	oxidase	-
122003	phenylalanine ammonia-lyase	-	4.3.1.24
68377	proline-arylamidase	+	3.4.11.5	from API NH
122003	tryptophan deaminase	-
68377	tryptophan deaminase	-	4.1.99.1	from API NH
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
122003	urease	+	3.5.1.5
68377	urease	+	3.5.1.5	from API NH
68368	urease	+	3.5.1.5	from API 20E

Fatty acid profile

Metadata FA analysis

@ref

44861

Fatty acid	Percentage	ECL
C16:0	35.4	16
C16:1 ω7c	32	15.819
C17:0 CYCLO	13.4	16.888
C18:1 ω7c /12t/9t	7.6	17.824
C14:0 3OH/C16:1 ISO I	5.6	15.485
C12:0 ALDE ?	2.4	10.915
C12:0	1.8	12
C14:0	1.2	14
C17:0	0.5	17

Metadata FA analysis

@ref

44861

Fatty acid	Percentage	ECL
C16:1 ω7c	43.9	15.819
C16:0	28.7	16
C14:0 3OH/C16:1 ISO I	10.2	15.485
C17:0 CYCLO	5.5	16.888
C18:1 ω7c /12t/9t	5.1	17.824
C12:0	2.8	12
C14:0	1.6	14
C15:0	0.9	15
C17:0	0.7	17
C18:0	0.6	18

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
3456	+	-	-	-	-	-	+	-	-	-	-	+	+	-	-	-	-	+	+	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
44861	-	+	+	-	-	+	-	-	-	-	+	+	-	+	-	-	+	-	-	-
122003	-	+	+	+	-	+	+	-	+	-	+	+	-	+	-	+	+	+	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
122003	not determinedn.d.	+/-	-	-	+	+/-	+	-	+/-	-	+	+	+	+	-	+	-	-	+	-	-	-	+	-	+	+	+	-	+	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	+/-	+/-	-	+/-

API NH

@ref	PEN	GLU	FRU	MAL	SAC	ODC	URE	LIP	PAL	beta GAL	ProA	GGT	IND
44861	-	+	+	-	-	-	+	-	-	+	+	+	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
122003	not determinedn.d.	+	+	+	+	+	-	+	-	-	+	+	-	-	-	+	-	-	+	+	+	+	+	-	+	-	-	+	+	-	-	-	+	+	+	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	+	-	-	-	+	-	-	+	-	+	+	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Birds

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Sampling date
3456	turkey	Stockholm	Sweden	SWE	Europe
44861	Turkey					1952
67770	Turkey
122003	Animal, Turkey	Stockholm	Sweden	SWE	Europe

Taxonmaps

69479

Global distribution of 16S sequence KC776733 (>99% sequence identity) for Yersiniaceae from Microbeatlas

Aquatic Samples	5584
Soil Samples	1734
Animal Samples	23907
Plant Samples	2111
Total Samples	33336

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3456	2	Risk group (German classification) According to TRBA 466
122003	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	51108_B01 assembly for Yersinia pseudotuberculosis NCTC10275	complete	GCA_900637475	633.147	2844429765	633	99.03
67770	ASM51167v1 assembly for Yersinia pseudotuberculosis NBRC 105692	contig	GCA_000511675	1218101.3	2563367111	1218101	50.72

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Yersinia pseudotuberculosis 16S ribosomal RNA gene, partial sequence	AF366375	1461	633
20218	Yersinia pseudotuberculosis strain ATCC 29833 16S ribosomal RNA gene, partial sequence	KC776733	1450	633
20218	Yersinia pseudotuberculosis strain CCUG 5855 16S ribosomal RNA gene, partial sequence	FJ717342	1460	633
20218	Yersinia pseudotuberculosis strain DSM 8992 16S ribosomal RNA gene, partial sequence	HM007593	1356	633
124043	Yersinia pseudotuberculosis gene for 16S rRNA, partial sequence, strain: NBRC 105692.	AB682266	1468	633

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: 51108_B01 assembly for Yersinia pseudotuberculosis NCTC10275
BV-BRC: 633.147

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	90.46	no
125439	gram_stain	BacteriaNetⓘ	negative	79.15	no
125439	motility	BacteriaNetⓘ	yes	61.23	no
125439	spore_formation	BacteriaNetⓘ	no	96.34	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Yersinia pseudotuberculosis NCTC10275
NCBI: GCA_900637475.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.75	no
125438	anaerobic	anaerobicⓘ	no	97.19	no
125438	aerobic	aerobicⓘ	no	63.36	no
125438	spore-forming	spore-formingⓘ	no	90.28	no
125438	thermophilic	thermophileⓘ	no	99.25	yes
125438	flagellated	motile2+ⓘ	yes	78.92	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Engineering thioesterase as a driving force for novel itaconate production via its degradation scheme.	Wang RS, Siao SW, Wang JC, Lin PY, Shen CR.	Metab Eng Commun	10.1016/j.mec.2024.e00246	2024
Pathogenicity	LFchimera protects HeLa cells from invasion by Yersinia spp. in vitro.	Sijbrandij T, Ligtenberg AJ, Nazmi K, van den Keijbus PAM, Veerman ECI, Bolscher JGM, Bikker FJ.	Biometals	10.1007/s10534-018-0136-0	2018
Proteome	Identification of Microorganisms by Liquid Chromatography-Mass Spectrometry (LC-MS¹) and in Silico Peptide Mass Libraries.	Lasch P, Schneider A, Blumenscheit C, Doellinger J.	Mol Cell Proteomics	10.1074/mcp.tir120.002061	2020
	Rapid Diagnostic of Streptococcus suis in Necropsy Samples of Pigs by thrA-Based Loop-Mediated Isothermal Amplification Assay.	Hess J, Kreitlow A, Rohn K, Hennig-Pauka I, Abdulmawjood A.	Microorganisms	10.3390/microorganisms11102447	2023
	Effects of lactoferrin derived peptides on simulants of biological warfare agents.	Sijbrandij T, Ligtenberg AJ, Nazmi K, Veerman EC, Bolscher JG, Bikker FJ.	World J Microbiol Biotechnol	10.1007/s11274-016-2171-8	2017
	Establishment and Validation of a Two-Step LAMP Assay for Detection of Bacillus cereus-Group Isolates in Food and Their Possibility of Non-haemolytic Enterotoxin Production.	Busch A, Schotte U, Jessberger N, Frentzel H, Plotz M, Abdulmawjood A.	Front Microbiol	10.3389/fmicb.2022.930648	2022
Enzymology	Colonization patterns of Enterococcus cecorum in two different broiler production cycles detected with a newly developed quantitative real-time PCR.	Jung A, Petersen H, Teske L, Rautenschlein S.	BMC Microbiol	10.1186/s12866-017-1021-7	2017
Enzymology	Highly sensitive real-time PCR for specific detection and quantification of Coxiella burnetii.	Klee SR, Tyczka J, Ellerbrok H, Franz T, Linke S, Baljer G, Appel B.	BMC Microbiol	10.1186/1471-2180-6-2	2006
	A bacteriophage cocktail targeting Yersinia pestis provides strong post-exposure protection in a rat pneumonic plague model.	Kilgore PB, Sha J, Hendrix EK, Neil BH, Lawrence WS, Peel JE, Hittle L, Woolston J, Sulakvelidze A, Schwartz JA, Chopra AK.	Microbiol Spectr	10.1128/spectrum.00942-24	2024
	Elastic Light Scatter Pattern Analysis for the Expedited Detection of Yersinia Species in Pork Mince: Proof of Concept.	On SLW, Zhang Y, Gehring A, Patsekin V, Chelikani V, Flint S, Wang H, Billington C, Fletcher GC, Lindsay J, Robinson JP.	Front Microbiol	10.3389/fmicb.2021.641801	2021
	The use of laser-based diagnostics for the rapid identification of infectious agents in human blood.	Multari RA, Cremers DA, Nelson A, Karimi Z, Young S, Fisher C, Duncan R.	J Appl Microbiol	10.1111/jam.14222	2019
	A New Generation Microarray for the Simultaneous Detection and Identification of Yersinia pestis and Bacillus anthracis in Food.	Goji N, Macmillan T, Amoako KK.	J Pathog	10.1155/2012/627036	2012
Pathogenicity	Engineering Phage Host-Range and Suppressing Bacterial Resistance through Phage Tail Fiber Mutagenesis.	Yehl K, Lemire S, Yang AC, Ando H, Mimee M, Torres MT, de la Fuente-Nunez C, Lu TK.	Cell	10.1016/j.cell.2019.09.015	2019
Enzymology	Quantification of bacterial indicators and zoonotic pathogens in dairy wastewater ponds.	Dungan RS, Klein M, Leytem AB.	Appl Environ Microbiol	10.1128/aem.02470-12	2012
Phylogeny	Novel genomic tools for specific and real-time detection of biothreat and frequently encountered foodborne pathogens.	Woubit A, Yehualaeshet T, Habtemariam T, Samuel T.	J Food Prot	10.4315/0362-028x.jfp-11-480	2012
Enzymology	Diversity and abundance of zoonotic pathogens and indicators in manures of feedlot cattle in Australia.	Klein M, Brown L, Tucker RW, Ashbolt NJ, Stuetz RM, Roser DJ.	Appl Environ Microbiol	10.1128/aem.01095-10	2010
	Standardized methods to generate mock (spiked) clinical specimens by spiking blood or plasma with cultured pathogens.	Dong M, Fisher C, Anez G, Rios M, Nakhasi HL, Hobson JP, Beanan M, Hockman D, Grigorenko E, Duncan R.	J Appl Microbiol	10.1111/jam.13082	2016
	Yersinia pseudotuberculosis septicemia and HIV.	Paglia MG, D'Arezzo S, Festa A, Del Borgo C, Loiacono L, Antinori A, Antonucci G, Visca P.	Emerg Infect Dis	10.3201/eid1107.041268	2005
	Rapid screening for antibiotic resistance elements on the RNA transcript, protein and enzymatic activity level.	Rohde A, Hammerl JA, Al Dahouk S.	Ann Clin Microbiol Antimicrob	10.1186/s12941-016-0167-8	2016
Enzymology	Recombinase polymerase amplification assay for rapid detection of Francisella tularensis.	Euler M, Wang Y, Otto P, Tomaso H, Escudero R, Anda P, Hufert FT, Weidmann M.	J Clin Microbiol	10.1128/jcm.06504-11	2012
Phylogeny	Identification of nucleotide sequences for the specific and rapid detection of Yersinia pestis.	Radnedge L, Gamez-Chin S, McCready PM, Worsham PL, Andersen GL.	Appl Environ Microbiol	10.1128/aem.67.8.3759-3762.2001	2001
	Comparison of Mast Burkholderia Cepacia, Ashdown + Gentamicin, and Burkholderia Pseudomallei Selective Agar for the Selective Growth of Burkholderia Spp.	Edler C, Derschum H, Kohler M, Neubauer H, Frickmann H, Hagen RM.	Eur J Microbiol Immunol (Bp)	10.1556/1886.2016.00037	2017
	Yersinia pseudotuberculosis produces a cytotoxic necrotizing factor.	Lockman HA, Gillespie RA, Baker BD, Shakhnovich E.	Infect Immun	10.1128/iai.70.5.2708-2714.2002	2002
	Bacterial phylogenetic tree construction based on genomic translation stop signals.	Xu L, Kuo J, Liu JK, Wong TY.	Microb Inform Exp	10.1186/2042-5783-2-6	2012
Genetics	DNA microarray analysis of genome dynamics in Yersinia pestis: insights into bacterial genome microevolution and niche adaptation.	Zhou D, Han Y, Song Y, Tong Z, Wang J, Guo Z, Pei D, Pang X, Zhai J, Li M, Cui B, Qi Z, Jin L, Dai R, Du Z, Bao J, Zhang X, Yu J, Wang J, Huang P, Yang R.	J Bacteriol	10.1128/jb.186.15.5138-5146.2004	2004
Enzymology	Ambient stable quantitative PCR reagents for the detection of Yersinia pestis.	Qu S, Shi Q, Zhou L, Guo Z, Zhou D, Zhai J, Yang R.	PLoS Negl Trop Dis	10.1371/journal.pntd.0000629	2010
Pathogenicity	In Vitro Antibacterial Properties of Cefiderocol, a Novel Siderophore Cephalosporin, against Gram-Negative Bacteria.	Ito A, Sato T, Ota M, Takemura M, Nishikawa T, Toba S, Kohira N, Miyagawa S, Ishibashi N, Matsumoto S, Nakamura R, Tsuji M, Yamano Y.	Antimicrob Agents Chemother	10.1128/aac.01454-17	2018
Enzymology	Molecular method for detection of total coliforms in drinking water samples.	Maheux AF, Boudreau DK, Bisson MA, Dion-Dupont V, Bouchard S, Nkuranga M, Bergeron MG, Rodriguez MJ.	Appl Environ Microbiol	10.1128/aem.00546-14	2014
Enzymology	Rapid identification of Yersinia enterocolitica in blood by the 5' nuclease PCR assay.	Sen K.	J Clin Microbiol	10.1128/jcm.38.5.1953-1958.2000	2000
Metabolism	Comparison of siderophore production and utilization in pathogenic and environmental isolates of Yersinia enterocolitica.	Chambers CE, Sokol PA.	J Clin Microbiol	10.1128/jcm.32.1.32-39.1994	1994
Pathogenicity	Natural antibiotic susceptibilities of Edwardsiella tarda, E. ictaluri, and E. hoshinae.	Stock I, Wiedemann B.	Antimicrob Agents Chemother	10.1128/aac.45.8.2245-2255.2001	2001
Enzymology	Comparison of hand-held test kits, immunofluorescence microscopy, enzyme-linked immunosorbent assay, and flow cytometric analysis for rapid presumptive identification of Yersinia pestis.	Tomaso H, Thullier P, Seibold E, Guglielmo V, Buckendahl A, Rahalison L, Neubauer H, Scholz HC, Splettstoesser WD.	J Clin Microbiol	10.1128/jcm.00458-07	2007
	Population genetics of human, animal, and environmental Yersinia strains.	Dolina M, Peduzzi R.	Appl Environ Microbiol	10.1128/aem.59.2.442-450.1993	1993
Enzymology	Rapid concentration and molecular enrichment approach for sensitive detection of Escherichia coli and Shigella species in potable water samples.	Maheux AF, Bissonnette L, Boissinot M, Bernier JL, Huppe V, Picard FJ, Berube E, Bergeron MG.	Appl Environ Microbiol	10.1128/aem.02337-10	2011
Phylogeny	Rapid differentiation of Francisella species and subspecies by fluorescent in situ hybridization targeting the 23S rRNA.	Splettstoesser WD, Seibold E, Zeman E, Trebesius K, Podbielski A.	BMC Microbiol	10.1186/1471-2180-10-72	2010
Metabolism	Identification of genes essential for prey-independent growth of Bdellovibrio bacteriovorus HD100.	Roschanski N, Klages S, Reinhardt R, Linscheid M, Strauch E.	J Bacteriol	10.1128/jb.01343-10	2011
	Restriction endonuclease analysis of the ilvGEDA operon of members of the family Enterobacteriaceae.	Driver RP, Lawther RP.	J Bacteriol	10.1128/jb.162.3.1317-1319.1985	1985
	PCR detection of virulence genes in Yersinia enterocolitica and Yersinia pseudotuberculosis and investigation of virulence gene distribution.	Thoerner P, Bin Kingombe CI, Bogli-Stuber K, Bissig-Choisat B, Wassenaar TM, Frey J, Jemmi T.	Appl Environ Microbiol	10.1128/aem.69.3.1810-1816.2003	2003
Proteome	Elucidation of peptide screen for targeted identification of Yersinia pestis by nano-liquid chromatography tandem mass spectrometry.	Rani P, Alam SI, Singh S, Kumar S.	Sci Rep	10.1038/s41598-024-81906-w	2025
Metabolism	Diagnostic bioluminescent phage for detection of Yersinia pestis.	Schofield DA, Molineux IJ, Westwater C.	J Clin Microbiol	10.1128/jcm.01533-09	2009
	Distribution of enteropathogenic Yersinia spp. and Salmonella spp. in the Swedish wild boar population, and assessment of risk factors that may affect their prevalence.	Sanno A, Rosendal T, Aspan A, Backhans A, Jacobson M.	Acta Vet Scand	10.1186/s13028-018-0395-3	2018
	A novel real-time PCR assay for specific detection of Brucella melitensis.	Kaden R, Ferrari S, Alm E, Wahab T.	BMC Infect Dis	10.1186/s12879-017-2327-7	2017
Enzymology	First case of type E wound botulism diagnosed using real-time PCR.	Artin I, Bjorkman P, Cronqvist J, Radstrom P, Holst E.	J Clin Microbiol	10.1128/jcm.01192-07	2007
Metabolism	The Cytotoxic Necrotizing Factor of Yersinia pseudotuberculosis (CNFy) is Carried on Extracellular Membrane Vesicles to Host Cells.	Monnappa AK, Bari W, Seo JK, Mitchell RJ	Sci Rep	10.1038/s41598-018-32530-y	2018
Phylogeny	Genomic comparison of Yersinia pestis and Yersinia pseudotuberculosis by combination of suppression subtractive hybridization and DNA microarray.	Wang X, Zhou D, Qin L, Dai E, Zhang J, Han Y, Guo Z, Song Y, Du Z, Wang J, Wang J, Yang R	Arch Microbiol	10.1007/s00203-006-0129-1	2006

References

#3456	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 8992
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#38377	; Curators of the CIP;
#44861	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 5855
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68371	Automatically annotated from API 50CH acid .
#68377	Automatically annotated from API NH .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122003	Collection of Institut Pasteur ; Curators of the CIP; CIP 55.85
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Yersinia pseudotuberculosis (DSM 8992, ATCC 29833, CIP 55.85)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Fatty acid profile

API 20E

API zym

API 50CHac

API NH

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900637475

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media