Name: Saccharopolyspora cebuensis DSM 45019
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 13465

Type strain:

Species: Saccharopolyspora cebuensis

Culture col. no.: DSM 45019, CIP 109355, SPE 10-1, JCM 18116

Strain history: CIP <- 2006, S.M. Pimentel-Elardo, Würzburg Univ., Würzburg, Germany: strain SPE 10-1

NCBI tax ID(s): 418759 (species)

SI-ID 297490

DSM 45019, CIP 109355, JCM 18116

Special Collections

Section

Saccharopolyspora cebuensis DSM 45019 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from marine sponge.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Saccharopolyspora*
	Species	**Saccharopolyspora cebuensis**
	Full Scientific Name (LPSN)	Saccharopolyspora cebuensis Pimentel-Elardo et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32105]	Gram stain	positive
[Ref.: #117226]	Gram stain	positive

[Ref.: #117226]	Cell shape	rod-shaped

[Ref.: #117226]	Motility	no

[Ref.: #32105]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12249]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #12249]

Culture medium growth

[Ref.: #12249]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12249]

Culture medium composition

expand / minimize

[Ref.: #33294]

Culture medium

MEDIUM 683 - for Saccharopolyspora cebuensis

[Ref.: #33294]

Culture medium growth

[Ref.: #33294]

Culture medium composition

expand / minimize

[Ref.: #117226]

Culture medium

CIP Medium 683

[Ref.: #117226]

Culture medium growth

[Ref.: #117226]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #12249]	growth	28 °C
[Ref.: #32105]	growth	15-37 °C
[Ref.: #33294]	growth	30 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32105]	Oxygen tolerance	aerobe
[Ref.: #117226]	Oxygen tolerance	obligate aerobe

[Ref.: #32105]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32105]		NaCl		growth	2.5-12.5	%

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-8(H₄), MK-10(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32105]	arabinose ChEBI	+	carbon source
[Ref.: #32105]	cellobiose ChEBI	+	carbon source
[Ref.: #32105]	fructose ChEBI	+	carbon source
[Ref.: #32105]	fucose ChEBI	+	carbon source
[Ref.: #32105]	galactose ChEBI	+	carbon source
[Ref.: #32105]	glucose ChEBI	+	carbon source
[Ref.: #32105]	glycerol ChEBI	+	carbon source
[Ref.: #32105]	glycogen ChEBI	+	carbon source
[Ref.: #32105]	L-arabitol ChEBI	+	carbon source
[Ref.: #32105]	lactose ChEBI	+	carbon source
[Ref.: #32105]	maltose ChEBI	+	carbon source
[Ref.: #32105]	mannose ChEBI	+	carbon source
[Ref.: #32105]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #117226]	nitrate ChEBI	-	reduction
[Ref.: #117226]	nitrite ChEBI	-	reduction
[Ref.: #32105]	raffinose ChEBI	+	carbon source
[Ref.: #32105]	rhamnose ChEBI	+	carbon source
[Ref.: #32105]	ribitol ChEBI	+	carbon source
[Ref.: #32105]	ribose ChEBI	+	carbon source
[Ref.: #32105]	sucrose ChEBI	+	carbon source
[Ref.: #32105]	trehalose ChEBI	+	carbon source
[Ref.: #32105]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #117226]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #32105]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #32105]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #32105]	catalase	+	1.11.1.6
[Ref.: #117226]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #117226]	oxidase	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #117226]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #117226]	11811	-	+	+	+	+	+	+	-	+	-	+	+	-	+	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12249]	Sample type/isolated from	marine sponge
[Ref.: #12249]	Geographic location (country and/or sea, region)	Cebu, Mactan Is.
[Ref.: #12249]	Country	Philippines
[Ref.: #12249]	Country ISO 3 Code	PHL
[Ref.: #12249]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Philippine sponge Haliclona sp. from Cebu
[Ref.: #67770]	Host species	Haliclona sp.
[Ref.: #67770]	Country	Philippines
[Ref.: #67770]	Country ISO 3 Code	PHL
[Ref.: #67770]	Continent	Asia

[Ref.: #117226]	Sample type/isolated from	Animal, Marine sponge, Haliclona sp.
[Ref.: #117226]	Geographic location (country and/or sea, region)	Mactan Island
[Ref.: #117226]	Country	Philippines
[Ref.: #117226]	Country ISO 3 Code	PHL
[Ref.: #117226]	Continent	Asia
[Ref.: #117226]	Isolation date	2003
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Porifera (Sponges)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12249]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #117226]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12249]	Saccharopolyspora cebuensis strain SPE 10-1 16S ribosomal RNA gene, partial sequence	EF030715	1483	GenBank ENA	418759 tax ID

[Ref.: #12249]	GC-content	72.6 mol%
[Ref.: #67770]	GC-content	72.6 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #12249]

Culture collection no.

DSM 45019, CIP 109355, SPE 10-1, JCM 18116

[Ref.: #82657]

SI-ID 297490

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Saccharopolyspora griseoalba sp. nov., a novel actinomycete isolated from the Dead Sea.	Jiang Y, Wei X, Chen X, Jiang Y, Xue Q, Lai H, Jiang C	Antonie Van Leeuwenhoek	10.1007/s10482-016-0763-9	2016	*
Phylogeny	Saccharopolyspora gloriosae sp. nov., an endophytic actinomycete isolated from the stem of Gloriosa superba L.	Qin S, Chen HH, Klenk HP, Kim CJ, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.015792-0	2009	*
Phylogeny	Saccharopolyspora cebuensis sp. nov., a novel actinomycete isolated from a Philippine sponge (Porifera).	Pimentel-Elardo SM, Tiro LP, Grozdanov L, Hentschel U	Int J Syst Evol Microbiol	10.1099/ijs.0.64971-0	2008	*

References

#12249

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45019

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32105

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28350 (see below)

#33294 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#82657

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297490.1 )

#117226 Collection of Institut Pasteur ; Curators of the CIP; CIP 109355

#28350

IJSEM 628 2008 ( DOI 10.1099/ijs.0.64971-0 , PubMed 18319468 )

* These data were automatically processed and therefore are not curated

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