Name: Saccharopolyspora endophytica DSM 45425
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 13464

Type strain:

Species: Saccharopolyspora endophytica

Culture col. no.: DSM 45425, CCTCC AA 208003, KCTC 19397, YIM 61095

Strain history: <- S Qin, Yunnan Inst., China

NCBI tax ID(s): 33915 (species), 543886 (species)

SI-ID 399153

DSM 45425

Special Collections

DSMZ
KCTC

Section

Saccharopolyspora endophytica DSM 45425 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from plant sample.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Saccharopolyspora*
	Species	**Saccharopolyspora endophytica**
	Full Scientific Name (LPSN)	Saccharopolyspora endophytica Qin et al. 2021

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %90.723

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16793]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #16793]

Culture medium growth

[Ref.: #16793]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16793]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16793]			growth	28 °C
[Ref.: #67771]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

[Ref.: #67771]

Observation

quinones: MK-9(H4)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16793]	Sample type/isolated from	plant sample
[Ref.: #16793]	Geographic location (country and/or sea, region)	Xishuangbanna, Yunnan Province
[Ref.: #16793]	Country	China
[Ref.: #16793]	Country ISO 3 Code	CHN
[Ref.: #16793]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From the root of Maytenus austroyunnanensis collected from a tropical rainforest of Xishuangbanna
[Ref.: #67771]	Geographic location (country and/or sea, region)	Yunnan
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Plants

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU814512 (>99% sequence identity) for Saccharopolyspora from Microbeatlas

Aquatic Samples	39
Soil Samples	398
Animal Samples	719
Plant Samples	116
Total Samples	1272

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16793]	Saccharopolyspora endophytica strain YIM 61095 16S ribosomal RNA gene, partial sequence	EU814512	1470	GenBank ENA	543886 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Saccharopolyspora endophytica KCTC 19397	GCA_018070075	contig	GenBank ENA	543886 tax ID	*
[Ref.: #66792]	Saccharopolyspora endophytica strain KCTC 19397	543886.5	wgs	PATRIC	543886 tax ID	*

[Ref.: #16793]

GC-content

66.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Saccharopolyspora endophytica strain KCTC 19397 PATRIC: 543886.5
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Saccharopolyspora endophytica strain KCTC 19397 PATRIC: 543886.5
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.723	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.168	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	85.161	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	86.343	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.978	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88	no

Availability in culture collections External links

[Ref.: #16793]

Culture collection no.

DSM 45425, CCTCC AA 208003, KCTC 19397, YIM 61095

[Ref.: #82656]

SI-ID 399153

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Characterization of the chromosomal integration of Saccharopolyspora plasmid pCM32 and its application to improve production of spinosyn in Saccharopolyspora spinosa.	Chen J, Xia H, Dang F, Xu Q, Li W, Qin Z	Appl Microbiol Biotechnol	10.1007/s00253-015-6871-z	2015	*
Phylogeny	Saccharopolyspora endophytica sp. nov., an endophytic actinomycete isolated from the root of Maytenus austroyunnanensis.	Qin S, Li J, Zhao GZ, Chen HH, Xu LH, Li WJ	Syst Appl Microbiol	10.1016/j.syapm.2008.08.001	2008	*

References

#16793

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45425

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82656

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399153.1 )

* These data were automatically processed and therefore are not curated

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Saccharopolyspora endophytica strain KCTC 19397

Saccharopolyspora endophytica strain KCTC 19397

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