Saccharopolyspora endophytica (DSM 45425, CCTCC AA 208003, KCTC 19397)

Name: Saccharopolyspora endophytica (DSM 45425, CCTCC AA 208003, KCTC 19397)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13464

Type strain

Culture col. no. DSM 45425 CCTCC AA 208003 KCTC 19397 YIM 61095

NCBI tax ID(s) 543886

Special Collections DSMZ KCTC

History <- S.-K. Tang, YIM; YIM 61095 <- S. Qin and Smith; <- S Qin, Yunnan Inst., China

Links

Saccharopolyspora endophytica DSM 45425 is an aerobe, Gram-positive bacterium that was isolated from plant sample.

Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 399153

KCTC 19397,DSM 45425

@ref 20215

Last LPSN update 2026-02-09 11:21:09

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Saccharopolyspora

Species Saccharopolyspora endophytica

Full scientific name Saccharopolyspora endophytica Qin et al. 2021

Morphology

Cell morphology

@ref	Gram stain	Confidence
67771	positive
125439	positive	99.8
125439		90
125438	positive	90.723

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16793	GPHF-MEDIUM (DSMZ Medium 553)		Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16793	positive	growth	28
67771	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67771	aerobe
125439	obligate aerobe	98.8

Observation

67771

Observationquinones: MK-9(H4)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Plants

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16793	plant sample	Xishuangbanna, Yunnan Province	China	CHN	Asia
67771	From the root of Maytenus austroyunnanensis collected from a tropical rainforest of Xishuangbanna	Yunnan	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU814512 (>99% sequence identity) for Saccharopolyspora from Microbeatlas

Aquatic Samples	39
Soil Samples	398
Animal Samples	719
Plant Samples	116
Total Samples	1272

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1807007v1 assembly for Saccharopolyspora endophytica KCTC 19397	contig	GCA_018070075	543886.5	8067266767	543886	71.36

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16793	Saccharopolyspora endophytica strain YIM 61095 16S ribosomal RNA gene, partial sequence	EU814512	1470		543886
124043	Saccharopolyspora endophytica strain YIM 61095(T) 16S ribosomal RNA gene, partial sequence.	MN686687	540		543886

GC content

16793

GC-content (mol%)66.2

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Saccharopolyspora endophytica KCTC 19397
NCBI: GCA_018070075

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	82.90	no
125439	motility	BacteriaNetⓘ	no	90.00	no
125439	gram_stain	BacteriaNetⓘ	positive	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Saccharopolyspora endophytica strain KCTC 19397
PATRIC: 543886.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.72	no
125438	anaerobic	anaerobicⓘ	no	96.17	yes
125438	spore-forming	spore-formingⓘ	yes	85.16	no
125438	aerobic	aerobicⓘ	yes	86.34	yes
125438	thermophilic	thermophileⓘ	no	95.98	yes
125438	flagellated	motile2+ⓘ	no	88.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Termite nests as an abundant source of cultivable actinobacteria for biotechnological purposes.	Sujada N, Sungthong R, Lumyong S.	Microbes Environ	10.1264/jsme2.me13183	2014
Metabolism	Characterization of the chromosomal integration of Saccharopolyspora plasmid pCM32 and its application to improve production of spinosyn in Saccharopolyspora spinosa.	Chen J, Xia H, Dang F, Xu Q, Li W, Qin Z	Appl Microbiol Biotechnol	10.1007/s00253-015-6871-z	2015
	Saccharopolyspora ipomoeae sp. nov., an Actinomycete Isolated from Sweet Potato Field Soils.	Suksaard P, Butdee W, Suriyachadkun C, Sirikesorn L, Duangmal K.	Curr Microbiol	10.1007/s00284-024-03661-5	2024
Phylogeny	Saccharopolyspora spongiae sp. nov., a novel actinomycete isolated from the marine sponge Scopalina ruetzleri (Wiedenmayer, 1977).	Souza DT, Silva FSPD, Silva LJD, Crevelin EJ, Moraes LAB, Zucchi TD, Melo IS.	Int J Syst Evol Microbiol	10.1099/ijsem.0.001912	2017
Enzymology	Saccharopolyspora dendranthemae sp. nov. a halotolerant endophytic actinomycete isolated from a coastal salt marsh plant in Jiangsu, China.	Zhang YJ, Zhang WD, Qin S, Bian GK, Xing K, Li YF, Cao CL, Jiang JH.	Antonie Van Leeuwenhoek	10.1007/s10482-013-9917-1	2013
Phylogeny	Saccharopolyspora pathumthaniensis sp. nov., a novel actinomycetes isolated from termite guts (Speculitermes sp.).	Sinma K, Ishida Y, Tamura T, Kitpreechavanich V, Tokuyama S.	J Gen Appl Microbiol	10.2323/jgam.57.93	2011
Phylogeny	Saccharopolyspora tripterygii sp. nov., an endophytic actinomycete isolated from the stem of Tripterygium hypoglaucum.	Li J, Zhao GZ, Qin S, Huang HY, Zhu WY, Xu LH, Li WJ.	Int J Syst Evol Microbiol	10.1099/ijs.0.011734-0	2009
Phylogeny	Saccharopolyspora endophytica sp. nov., an endophytic actinomycete isolated from the root of Maytenus austroyunnanensis.	Qin S, Li J, Zhao GZ, Chen HH, Xu LH, Li WJ	Syst Appl Microbiol	10.1016/j.syapm.2008.08.001	2008

References

#16793	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45425
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Saccharopolyspora endophytica (DSM 45425, CCTCC AA 208003, KCTC 19397)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_018070075

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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