Name: Kurthia huakuii DSM 103359
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132162

Type strain:

Species: Kurthia huakuii

Culture col. no.: DSM 103359, ACCC 06121, JCM 19187, LAM 0618

Strain history: Z. Ruan; Inst. of Agric. Resour. & Reg. Plann., CAAS, China; LAM0618.

NCBI tax ID(s): 1421019 (species)

SI-ID 406473

DSM 103359

Section

Kurthia huakuii DSM 103359 is a mesophilic, Gram-positive bacterium that was isolated from biogas slurry samples from large-scale anaerobic digester of Modern Farming Corporation.

Gram-positive
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Kurthia*
	Species	**Kurthia huakuii**
	Full Scientific Name (LPSN)	Kurthia huakuii Ruan et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23951]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #23951]

Culture medium growth

[Ref.: #23951]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23951]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23951]			growth	28 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #23951]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %96.847

[Ref.: #67770]

Observation

quinones: MK-7, MK-6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23951]	Sample type/isolated from	biogas slurry samples from large-scale anaerobic digester of Modern Farming Corporation
[Ref.: #23951]	Geographic location (country and/or sea, region)	Hebei Province
[Ref.: #23951]	Country	China
[Ref.: #23951]	Country ISO 3 Code	CHN
[Ref.: #23951]	Continent	Asia
[Ref.: #23951]	Geographic location	41.8667°/115.8000°

[Ref.: #67770]	Sample type/isolated from	Biogas slurry samples collected from the large-scale anaerobic digester of Modern Farming Corporation in Hebei Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Machines and devices
#Environmental	#Terrestrial	#Mud (Sludge)
#Condition	#Anoxic (anaerobic)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC904244 (>99% sequence identity) for Kurthia from Microbeatlas

Aquatic Samples	741
Soil Samples	507
Animal Samples	6927
Plant Samples	165
Total Samples	8340

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #23951]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23951]	Kurthia sp. LAM0618 16S ribosomal RNA gene, partial sequence	KC904244	1439	ENA	1334046 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Kurthia huakuii LAM0618	GCA_000505545	contig	GenBank	1334046 tax ID
[Ref.: #66792]	Kurthia huakuii DSM 103359	GCA_016909055	contig	GenBank	1421019 tax ID	*
[Ref.: #66792]	Kurthia huakuii strain DSM 103359	1421019.3	wgs	PATRIC	1421019 tax ID	*
[Ref.: #66792]	Kurthia huakuii DSM 103359	2901259410	draft	JGI IMG/M	1421019 tax ID	*

[Ref.: #23951]	GC-content	41 mol%
[Ref.: #67770]	GC-content	41 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	39.1 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Kurthia huakuii strain DSM 103359 PATRIC: 1421019.3
[Ref.: #69481]	spore-forming	yes	72	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kurthia huakuii strain DSM 103359 PATRIC: 1421019.3
[Ref.: #69480]	motile	yes	88.058	no
[Ref.: #69480]	gram-positive	yes	88.047	no
[Ref.: #69480]	anaerobic	no	96.805	no
[Ref.: #69480]	halophile	no	82.857	no
[Ref.: #69480]	spore-forming	yes	87.708	no
[Ref.: #69480]	thermophile	no	92.342	yes
[Ref.: #69480]	glucose-util	yes	78.049	no
[Ref.: #69480]	aerobic	yes	86.225	no
[Ref.: #69480]	flagellated	yes	77.423	no
[Ref.: #69480]	glucose-ferment	no	85.333	no

Availability in culture collections External links

[Ref.: #23951]

Culture collection no.

DSM 103359, ACCC 06121, JCM 19187, LAM 0618

[Ref.: #90518]

SI-ID 406473

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Metabolism	Characterization of AiiK, an AHL lactonase, from Kurthia huakui LAM0618(T) and its application in quorum quenching on Pseudomonas aeruginosa PAO1.	Dong W, Zhu J, Guo X, Kong D, Zhang Q, Zhou Y, Liu X, Zhao S, Ruan Z	Sci Rep	10.1038/s41598-018-24507-8	2018	*
Phylogeny	Kurthia huakuii sp. nov., isolated from biogas slurry, and emended description of the genus Kurthia.	Ruan Z, Wang Y, Song J, Jiang S, Wang H, Li Y, Zhao B, Jiang R, Zhao B	Int J Syst Evol Microbiol	10.1099/ijs.0.056044-0	2013	*
Metabolism	Characterization of a Highly Thermostable and Organic Solvent-Tolerant Copper-Containing Polyphenol Oxidase with Dye-Decolorizing Ability from Kurthia huakuii LAM0618T.	Guo X, Zhou S, Wang Y, Song J, Wang H, Kong D, Zhu J, Dong W, He M, Hu G, Ruan Z	PLoS One	10.1371/journal.pone.0164810	2016	*
Transcriptome	Multilocus sequence analysis of the genus Kurthia, and a description of Kurthia populi sp. nov.	Fang W, Guo MW, Ruan ZY, Xue H, Wang LF, Tian GZ, Piao CG, Li Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.000494	2015	*
Genetics	Draft Genome Sequence of Kurthia huakuii LAM0618T, an Organic-Pollutant-Degrading Strain Isolated from Biogas Slurry.	Ruan Z, Wang Y, Song J, Zhai Y, Zhang C, Chen C, Li Y, Zhao B, Zhao B	Genome Announc	10.1128/genomeA.01158-13	2014	*
	Biodetoxification of Phenolic Inhibitors from Lignocellulose Pretreatment using Kurthia huakuii LAM0618(T) and Subsequent Lactic Acid Fermentation.	Xie Y, Hu Q, Feng G, Jiang X, Hu J, He M, Hu G, Zhao S, Liang Y, Ruan Z, Peng N	Molecules	10.3390/molecules23102626	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23951

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103359

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#90518

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406473.1 )

* These data were automatically processed and therefore are not curated

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Kurthia huakuii strain DSM 103359

Kurthia huakuii strain DSM 103359

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