Teichococcus rhizosphaerae (DSM 103151, CCTCC AB 2013041, KACC 17225)

Name: Teichococcus rhizosphaerae (DSM 103151, CCTCC AB 2013041, KACC 17225)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132163

Type strain

Strain Designation YW11

Culture col. no. DSM 103151 CCTCC AB 2013041 KACC 17225 YW11

NCBI tax ID(s) 1335062

Special Collections DSMZ

Links

Teichococcus rhizosphaerae YW11 is a mesophilic prokaryote that was isolated from Soil.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 407205

DSM 103151

@ref 20215

Last LPSN update 2025-12-16 10:01:26

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Acetobacteraceae

Genus Teichococcus

Species Teichococcus rhizosphaerae

Full scientific name Teichococcus rhizosphaerae (Chen et al. 2014) Liu and Xin 2025

Synonyms (2)

Pseudoroseomonas rhizosphaerae
Roseomonas rhizosphaerae

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
23952	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
23952	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	96.4

Spore formation

@ref	Spore formation	Confidence
125439		94.3

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	acetate fermentation	100	4 of 4
66794	ethanol fermentation	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	cardiolipin biosynthesis	100	7 of 7
66794	formaldehyde oxidation	100	3 of 3
66794	adipate degradation	100	2 of 2
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	valine metabolism	100	9 of 9
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	chorismate metabolism	100	9 of 9
66794	L-lactaldehyde degradation	100	3 of 3
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	starch degradation	100	10 of 10
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	gluconeogenesis	100	8 of 8
66794	ceramide biosynthesis	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	suberin monomers biosynthesis	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	citric acid cycle	92.86	13 of 14
66794	photosynthesis	92.86	13 of 14
66794	degradation of aromatic, nitrogen containing compounds	91.67	11 of 12
66794	threonine metabolism	90	9 of 10
66794	Entner Doudoroff pathway	90	9 of 10
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	4-hydroxymandelate degradation	88.89	8 of 9
66794	propanol degradation	85.71	6 of 7
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	vitamin B1 metabolism	84.62	11 of 13
66794	vitamin B12 metabolism	82.35	28 of 34
66794	flavin biosynthesis	80	12 of 15
66794	glycine betaine biosynthesis	80	4 of 5
66794	cellulose degradation	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	cysteine metabolism	77.78	14 of 18
66794	NAD metabolism	77.78	14 of 18
66794	lipid A biosynthesis	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	phenylalanine metabolism	76.92	10 of 13
66794	leucine metabolism	76.92	10 of 13
66794	purine metabolism	76.6	72 of 94
66794	CMP-KDO biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	lactate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	biotin biosynthesis	75	3 of 4
66794	methionine metabolism	73.08	19 of 26
66794	d-xylose degradation	72.73	8 of 11
66794	vitamin B6 metabolism	72.73	8 of 11
66794	metabolism of disaccharids	72.73	8 of 11
66794	pentose phosphate pathway	72.73	8 of 11
66794	proline metabolism	72.73	8 of 11
66794	alanine metabolism	72.41	21 of 29
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	glutathione metabolism	71.43	10 of 14
66794	heme metabolism	71.43	10 of 14
66794	propionate fermentation	70	7 of 10
66794	histidine metabolism	68.97	20 of 29
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	pyrimidine metabolism	66.67	30 of 45
66794	acetoin degradation	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	IAA biosynthesis	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	cyanate degradation	66.67	2 of 3
66794	oxidative phosphorylation	65.93	60 of 91
66794	non-pathway related	65.79	25 of 38
66794	glycolysis	64.71	11 of 17
66794	lipid metabolism	64.52	20 of 31
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	arginine metabolism	62.5	15 of 24
66794	lysine metabolism	61.9	26 of 42
66794	urea cycle	61.54	8 of 13
66794	tryptophan metabolism	60.53	23 of 38
66794	degradation of sugar acids	60	15 of 25
66794	ethylmalonyl-CoA pathway	60	3 of 5
66794	coenzyme M biosynthesis	60	6 of 10
66794	gallate degradation	60	3 of 5
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	degradation of pentoses	57.14	16 of 28
66794	degradation of sugar alcohols	56.25	9 of 16
66794	polyamine pathway	52.17	12 of 23
66794	cyclohexanol degradation	50	2 of 4
66794	sulfopterin metabolism	50	2 of 4
66794	ribulose monophosphate pathway	50	1 of 2
66794	toluene degradation	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	carnitine metabolism	50	4 of 8
66794	glycine metabolism	50	5 of 10
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	vitamin E metabolism	50	2 of 4
66794	quinate degradation	50	1 of 2
66794	resorcinol degradation	50	1 of 2
66794	ketogluconate metabolism	50	4 of 8
66794	tyrosine metabolism	50	7 of 14
66794	phenylmercury acetate degradation	50	1 of 2
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	50	4 of 8
66794	phenol degradation	45	9 of 20
66794	nitrate assimilation	44.44	4 of 9
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	arachidonate biosynthesis	40	2 of 5
66794	D-cycloserine biosynthesis	40	2 of 5
66794	myo-inositol biosynthesis	40	4 of 10
66794	3-phenylpropionate degradation	40	6 of 15
66794	creatinine degradation	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	hydrogen production	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	degradation of hexoses	38.89	7 of 18
66794	arachidonic acid metabolism	38.89	7 of 18
66794	sulfate reduction	38.46	5 of 13
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	ascorbate metabolism	36.36	8 of 22
66794	carotenoid biosynthesis	36.36	8 of 22
66794	allantoin degradation	33.33	3 of 9
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	pantothenate biosynthesis	33.33	2 of 6
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	alginate biosynthesis	25	1 of 4
66794	bile acid biosynthesis, neutral pathway	23.53	4 of 17

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
23952	Soil	Jinagsu province, Yangzhou city	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence KC904962 (>99% sequence identity) for Roseomonas from Microbeatlas

Aquatic Samples	4
Soil Samples	2
Animal Samples	18
Plant Samples	9
Total Samples	33

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
23952	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM263118v1 assembly for Teichococcus rhizosphaerae YW11	contig	GCA_002631185	1335062.3	2791355000	1335062	55.3

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
23952	Pseudoroseomonas rhizosphaerae strain YW11 16S ribosomal RNA gene, partial sequence	KC904962	1409		1335062

GC content

23952

GC-content (mol%)69.6

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudoroseomonas rhizosphaerae YW11
NCBI: GCA_002631185

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.30	no
125439	motility	BacteriaNetⓘ	yes	59.20	no
125439	gram_stain	BacteriaNetⓘ	negative	89.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.40	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Validation List no. 221: valid publication of new names and new combinations effectively published outside the IJSEM.	Oren A, Goker M.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006562	2025
Phylogeny	Roseomonas rhizosphaerae sp. nov., a triazophos-degrading bacterium isolated from soil.	Chen Q, Sun LN, Zhang XX, He J, Kwon SW, Zhang J, Li SP, Gu JG	Int J Syst Evol Microbiol	10.1099/ijs.0.057000-0	2014
Phylogeny	Roseomonas rubra sp. nov., isolated from lagoon sediments.	Subhash Y, Bang JJ, You TH, Lee SS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001271	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23952	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103151
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Teichococcus rhizosphaerae (DSM 103151, CCTCC AB 2013041, KACC 17225)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002631185

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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