Strain identifier
BacDive ID: 132162
Type strain: 
Species: Kurthia huakuii
Strain history: Z. Ruan; Inst. of Agric. Resour. & Reg. Plann., CAAS, China; LAM0618.
NCBI tax ID(s): 1421019 (species)
version 9.1 (current version)
General
@ref: 23951
BacDive-ID: 132162
DSM-Number: 103359
keywords: genome sequence, 16S sequence, Bacteria
description: Kurthia huakuii DSM 103359 is a bacterium that was isolated from biogas slurry samples from large-scale anaerobic digester of Modern Farming Corporation.
NCBI tax id
- NCBI tax id: 1421019
- Matching level: species
strain history
| @ref | history |
|---|---|
| 23951 | <- JCM, Riken BioResource Center, Tsukuba, Japan; JCM 19187 <- Z. Ruan, LAM0618 |
| 67770 | Z. Ruan; Inst. of Agric. Resour. & Reg. Plann., CAAS, China; LAM0618. |
doi: 10.13145/bacdive132162.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Caryophanaceae
- genus: Kurthia
- species: Kurthia huakuii
- full scientific name: Kurthia huakuii Ruan et al. 2014
@ref: 23951
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Caryophanaceae
genus: Kurthia
species: Kurthia huakuii
full scientific name: Kurthia huakuii Ruan et al. 2014
type strain: yes
Culture and growth conditions
culture medium
- @ref: 23951
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 23951 | positive | growth | 28 |
| 67770 | positive | growth | 30 |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-7, MK-6
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 23951 | biogas slurry samples from large-scale anaerobic digester of Modern Farming Corporation | Hebei Province | China | CHN | Asia | 41.8667 | 115.8 |
| 67770 | Biogas slurry samples collected from the large-scale anaerobic digester of Modern Farming Corporation in Hebei Province | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Industrial | #Machines and devices |
| #Environmental | #Terrestrial | #Mud (Sludge) |
| #Condition | #Anoxic (anaerobic) |
taxonmaps
- @ref: 69479
- File name: preview.99_621.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_393;97_443;98_505;99_621&stattab=map
- Last taxonomy: Kurthia
- 16S sequence: KC904244
- Sequence Identity:
- Total samples: 8340
- soil counts: 507
- aquatic counts: 741
- animal counts: 6927
- plant counts: 165
Safety information
risk assessment
- @ref: 23951
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 23951
- description: Kurthia sp. LAM0618 16S ribosomal RNA gene, partial sequence
- accession: KC904244
- length: 1439
- database: nuccore
- NCBI tax ID: 1334046
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Kurthia huakuii DSM 103359 | GCA_016909055 | contig | ncbi | 1421019 |
| 66792 | Kurthia huakuii strain DSM 103359 | 1421019.3 | wgs | patric | 1421019 |
| 66792 | Kurthia huakuii DSM 103359 | 2901259410 | draft | img | 1421019 |
| 67770 | Kurthia huakuii LAM0618 | GCA_000505545 | contig | ncbi | 1334046 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 23951 | 41 | |
| 67770 | 41 | thermal denaturation, midpoint method (Tm) |
| 67770 | 39.1 | genome sequence analysis |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 72 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 75.073 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 93.592 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 73.124 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 75.552 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 89.074 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 77.167 | no |
External links
@ref: 23951
culture collection no.: DSM 103359, ACCC 06121, JCM 19187, LAM 0618
straininfo link
- @ref: 90518
- straininfo: 406473
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24108326 | Kurthia huakuii sp. nov., isolated from biogas slurry, and emended description of the genus Kurthia. | Ruan Z, Wang Y, Song J, Jiang S, Wang H, Li Y, Zhao B, Jiang R, Zhao B | Int J Syst Evol Microbiol | 10.1099/ijs.0.056044-0 | 2013 | Bacterial Typing Techniques, Base Composition, Biofuels/*microbiology, Bioreactors/microbiology, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, Molecular Sequence Data, *Phylogeny, Planococcaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Genetics | 24435864 | Draft Genome Sequence of Kurthia huakuii LAM0618T, an Organic-Pollutant-Degrading Strain Isolated from Biogas Slurry. | Ruan Z, Wang Y, Song J, Zhai Y, Zhang C, Chen C, Li Y, Zhao B, Zhao B | Genome Announc | 10.1128/genomeA.01158-13 | 2014 | Phylogeny | |
| Metabolism | 27741324 | Characterization of a Highly Thermostable and Organic Solvent-Tolerant Copper-Containing Polyphenol Oxidase with Dye-Decolorizing Ability from Kurthia huakuii LAM0618T. | Guo X, Zhou S, Wang Y, Song J, Wang H, Kong D, Zhu J, Dong W, He M, Hu G, Ruan Z | PLoS One | 10.1371/journal.pone.0164810 | 2016 | Amino Acid Sequence, Bacterial Proteins/genetics/*metabolism, Biocatalysis, Catechol Oxidase/genetics/*metabolism, Cloning, Molecular, Coloring Agents/chemistry/*metabolism, Copper/*chemistry, Dopamine/metabolism, Escherichia coli/metabolism, Firmicutes/*metabolism, Hydrogen-Ion Concentration, Kinetics, Molecular Sequence Data, Oxidation-Reduction, Pyrogallol/analogs & derivatives/chemistry/metabolism, Recombinant Proteins/biosynthesis/isolation & purification, Rosaniline Dyes/chemistry/metabolism, Sequence Alignment, Solvents/chemistry, Substrate Specificity, Temperature | Enzymology |
| Transcriptome | 28875926 | Multilocus sequence analysis of the genus Kurthia, and a description of Kurthia populi sp. nov. | Fang W, Guo MW, Ruan ZY, Xue H, Wang LF, Tian GZ, Piao CG, Li Y | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000494 | 2015 | Phylogeny | |
| Metabolism | 29662232 | Characterization of AiiK, an AHL lactonase, from Kurthia huakui LAM0618(T) and its application in quorum quenching on Pseudomonas aeruginosa PAO1. | Dong W, Zhu J, Guo X, Kong D, Zhang Q, Zhou Y, Liu X, Zhao S, Ruan Z | Sci Rep | 10.1038/s41598-018-24507-8 | 2018 | Acyl-Butyrolactones/*metabolism, Bacterial Proteins/genetics/*metabolism, Carboxylic Ester Hydrolases/genetics/*metabolism, Cloning, Molecular, Gene Expression Regulation, Bacterial, Hydrolysis, Planococcaceae/genetics/*physiology, Pseudomonas aeruginosa/genetics/*physiology, Pyocyanine/metabolism, *Quorum Sensing, Substrate Specificity | Enzymology |
| 30322101 | Biodetoxification of Phenolic Inhibitors from Lignocellulose Pretreatment using Kurthia huakuii LAM0618(T) and Subsequent Lactic Acid Fermentation. | Xie Y, Hu Q, Feng G, Jiang X, Hu J, He M, Hu G, Zhao S, Liang Y, Ruan Z, Peng N | Molecules | 10.3390/molecules23102626 | 2018 | Batch Cell Culture Techniques, Benzaldehydes/chemistry, Biodegradation, Environmental, Biomass, Bioreactors/microbiology, Fermentation, Lactic Acid/*chemistry, Lignin/*chemistry, Planococcaceae/*physiology, Zea mays/*chemistry |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23951 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103359 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103359) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 90518 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406473.1 |