Rhodococcus sp. (DSM 102715, Leaf278)

Name: Rhodococcus sp. (DSM 102715, Leaf278)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131919

Type strain

Strain Designation Leaf278

Culture col. no. DSM 102715 Leaf278

NCBI tax ID(s) 194249

Special Collections DSMZ Arabidopsis

History <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf278 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

Links

Leaf278 is a bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 398112

DSM 102715

@ref 20215

Last LPSN update 2026-02-09 11:31:35

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Nocardiaceae

Genus Rhodococcus

Full scientific name Rhodococcus Zopf 1891 (Approved Lists 1980)

Synonyms (4)

"Prescottia"
"Prescottella"
Prescottella
Rhodococcoides

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125438		93
125438		92.64	positive

Multimedia

@ref:	23711
multimedia content:	DSM_102715.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_102715.jpg
caption:	Medium 215 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
23711	BHI MEDIUM (DSMZ Medium 215)		Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
23711	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
23711	leaf of Arabidopsis thaliana, wild-type genotype	Arabidopsis thaliana	Seebach (47,4227222N 8,548666667E)	Switzerland	CHE	Europe	47.4227	8.5487 47.4227/8.5487

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Leaf278 assembly for Rhodococcus sp. Leaf278	contig	GCA_001426085	1736319.3	2643221957	1736319	70.01

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Rhodococcus sp. Leaf278
NCBI: GCA_001426085

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	74.90	no
125439	motility	BacteriaNetⓘ	no	71.30	no
125439	gram_stain	BacteriaNetⓘ	positive	87.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Rhodococcus sp. Leaf278
PATRIC: 1736319.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.64	no
125438	anaerobic	anaerobicⓘ	no	97.98	no
125438	spore-forming	spore-formingⓘ	no	58.74	no
125438	aerobic	aerobicⓘ	yes	89.33	no
125438	thermophilic	thermophileⓘ	no	96.50	yes
125438	flagellated	motile2+ⓘ	no	93.00	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23711	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102715
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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