Rhodococcus sp. (DSM 44980, BCP1)

Name: Rhodococcus sp. (DSM 44980, BCP1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 23159

Type strain

Strain Designation BCP1

Culture col. no. DSM 44980 BCP1

NCBI tax ID(s) 194249

Special Collections DSMZ

History DSMZ <- S. Fedi; BCP1

Links

BCP1 is a bacterium that was isolated from sediment contaminated with chlorinated solvents.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 406759

DSM 44980

@ref 20215

Last LPSN update 2026-05-29 08:30:23

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Nocardiaceae

Genus Rhodococcus

Full scientific name Rhodococcus Zopf 1891 (Approved Lists 1980)

Synonyms (3)

"Prescottella"
Rhodococcoides
"Prescottia"

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125438		93
125438		90.002	positive

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
18910	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
18910	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	91.598
125439	facultative anaerobe	96.257

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Contamination	-
#Environmental	#Terrestrial	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
18910	sediment contaminated with chlorinated solvents	Emilia Romagna	Italy	ITA	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
66792	RhoBCP1_1.0 assembly for Rhodococcus aetherivorans BCP1	chromosome	GCA_000470885	2597489953	191292	83

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
18910	Rhodococcus sp. F 16S ribosomal RNA gene, partial sequence	DQ001072	1518		325418

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: RhoBCP1_1.0 assembly for Rhodococcus aetherivorans BCP1
NCBI: GCA_000470885

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	96.26	no
125439	gram_stain	BacteriaNetⓘ	positive	89.06	no
125439	motility	BacteriaNetⓘ	no	81.35	no
125439	spore_formation	BacteriaNetⓘ	yes	84.32	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Rhodococcus aetherivorans strain BCP1
PATRIC: 191292.16

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.00	no
125438	anaerobic	anaerobicⓘ	no	97.34	no
125438	spore-forming	spore-formingⓘ	no	54.59	no
125438	thermophilic	thermophileⓘ	no	97.90	no
125438	aerobic	aerobicⓘ	yes	91.60	no
125438	flagellated	motile2+ⓘ	no	93.00	no

Literature

References

#18910	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44980
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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