Name: Rhodococcus sp. JCM 9789
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 166060

Type strain:

Species: Rhodococcus sp.

Culture col. no.: JCM 9789

Strain history: T. Kudo HA99.

NCBI tax ID(s): 402289 (species)

Other strains from Rhodococcus sp.

Section

Rhodococcus sp. JCM 9789 is a mesophilic, Gram-positive prokaryote that was isolated from Garden soil,by enrichment with biphenyl as the sole source of carbon and energy.

Gram-positive
mesophilic
16S sequence
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Genus	*Rhodococcus*
	Full Scientific Name (LPSN)	Rhodococcus Zopf 1891 (Approved Lists 1980)

	Synonym	Prescottella
	Synonym	"Rhodococcoides"
	Synonym	Spelaeibacter
	Synonym	"Prescottia"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %91.87

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.866

[Ref.: #67770]

Observation

quinones: MK-8(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Garden soil,by enrichment with biphenyl as the sole source of carbon and energy
[Ref.: #67770]	Geographic location (country and/or sea, region)	Saitama Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Rhodococcus sp. DNA for 16S rRNA, partial sequence	D87092	890	ENA	1831 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhodococcus sp. HA99 JCM 9789	GCA_001312925	contig	GenBank	402289 tax ID	*
[Ref.: #66792]	Rhodococcus sp. HA99 strain JCM 9789	402289.3	wgs	PATRIC	402289 tax ID	*
[Ref.: #66792]	Rhodococcus sp. JCM 9789	2734481922	draft	JGI IMG/M	402289 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rhodococcus sp. HA99 strain JCM 9789 PATRIC: 402289.3
[Ref.: #69481]	spore-forming	no	61	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhodococcus sp. HA99 strain JCM 9789 PATRIC: 402289.3
[Ref.: #69480]	gram-positive	yes	87.083	no
[Ref.: #69480]	anaerobic	no	99.193	no
[Ref.: #69480]	halophile	no	85.96	no
[Ref.: #69480]	spore-forming	no	73.034	no
[Ref.: #69480]	glucose-util	yes	87.637	no
[Ref.: #69480]	aerobic	yes	87.596	no
[Ref.: #69480]	flagellated	no	98.889	no
[Ref.: #69480]	thermophile	no	99.796	no
[Ref.: #69480]	motile	no	94.321	no
[Ref.: #69480]	glucose-ferment	no	90.88	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 9789

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Rhodococcus sp. HA99 strain JCM 9789

Rhodococcus sp. HA99 strain JCM 9789

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