Name: Rhodococcus sp. JCM 9789
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 166060

Type strain:

Species: Rhodococcus sp.

Culture col. no.: JCM 9789

Strain history: T. Kudo HA99.

NCBI tax ID(s): 402289 (species)

Special Collections

Other strains from Rhodococcus sp.

Section

Rhodococcus sp. JCM 9789 is a prokaryote that was isolated from Garden soil,by enrichment with biphenyl as the sole source of carbon and energy.

16S sequence
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Genus	*Rhodococcus*
	Full Scientific Name (LPSN)	Rhodococcus Zopf 1891 (Approved Lists 1980)

	Synonym	Prescottella
	Synonym	"Rhodococcoides"
	Synonym	Spelaeibacter
	Synonym	"Prescottia"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Motility	no Confidence in %92

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %90.925

[Ref.: #67770]

Observation

quinones: MK-8(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Garden soil,by enrichment with biphenyl as the sole source of carbon and energy
[Ref.: #67770]	Geographic location (country and/or sea, region)	Saitama Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Rhodococcus sp. DNA for 16S rRNA, partial sequence	D87092	890	GenBank ENA	1831 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhodococcus sp. HA99 JCM 9789	GCA_001312925	contig	GenBank ENA	402289 tax ID	*
[Ref.: #66792]	Rhodococcus sp. HA99 strain JCM 9789	402289.3	wgs	PATRIC	402289 tax ID	*
[Ref.: #66792]	Rhodococcus sp. JCM 9789	2734481922	draft	JGI IMG/M	402289 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rhodococcus sp. HA99 strain JCM 9789 PATRIC: 402289.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	61	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhodococcus sp. HA99 strain JCM 9789 PATRIC: 402289.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	87.904	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.424	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	58.309	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	90.925	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	92	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 9789

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Rhodococcus sp. HA99 strain JCM 9789

Rhodococcus sp. HA99 strain JCM 9789

Change proposal

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