Name: Ligilactobacillus murinus M5-8a
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130962

Type strain:

Species: Ligilactobacillus murinus

Strain Designation: M5-8a

Culture col. no.: DSM 100193

Strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany <- M. W. Hornef, RWTH Aachen, Germany; M5-8a

NCBI tax ID(s): 1622 (species)

SI-ID 404646

DSM 100193

Special Collections

Other strains from Ligilactobacillus murinus

Section

Ligilactobacillus murinus M5-8a is a microaerophile bacterium that was isolated from newborn SPF mouse .

microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Ligilactobacillus*
	Species	**Ligilactobacillus murinus**
	Full Scientific Name (LPSN)	Ligilactobacillus murinus (Hemme et al. 1982) Zheng et al. 2020

Synonym

Lactobacillus murinus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %94.095

[Ref.: #22254]

Incubation period

2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22254]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #22254]

Culture medium growth

[Ref.: #22254]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22254]

Culture medium composition

expand / minimize

[Ref.: #22254]

Culture medium

LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)

[Ref.: #22254]

Culture medium growth

[Ref.: #22254]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22254]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22254]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #22254]

Oxygen tolerance

microaerophile

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22254]	Sample type/isolated from	newborn SPF mouse (6-day-old)
[Ref.: #22254]	Geographic location (country and/or sea, region)	Freiburg
[Ref.: #22254]	Country	Germany
[Ref.: #22254]	Country ISO 3 Code	DEU
[Ref.: #22254]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host

#Mammals

#Muridae (Mouse/Rat)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU196090 (>99% sequence identity) for Ligilactobacillus from Microbeatlas

Aquatic Samples	383
Soil Samples	571
Animal Samples	37886
Plant Samples	247
Total Samples	39087

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22254]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22254]	Ligilactobacillus murinus strain DSM 100193 16S ribosomal RNA gene, partial sequence	KU196090	1502	GenBank ENA	1622 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Ligilactobacillus murinus DSM 100193	GCA_024622385	contig	GenBank ENA	1622 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Ligilactobacillus murinus DSM 100193 NCBI: GCA_024622385.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	94.095	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	84.394	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	97.199	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	86.014	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.5	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88	no

Availability in culture collections External links

[Ref.: #22254]

Culture collection no.

DSM 100193

[Ref.: #89439]

SI-ID 404646

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22254

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100193

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89439

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404646.1 )

* These data were automatically processed and therefore are not curated

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Ligilactobacillus murinus DSM 100193

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