Strain identifier
BacDive ID: 130962
Type strain: 
Species: Ligilactobacillus murinus
Strain Designation: M5-8a
Strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany <- M. W. Hornef, RWTH Aachen, Germany; M5-8a
NCBI tax ID(s): 1622 (species)
version 9.1 (current version)
General
@ref: 22254
BacDive-ID: 130962
DSM-Number: 100193
keywords: genome sequence, 16S sequence, Bacteria, microaerophile
description: Ligilactobacillus murinus M5-8a is a microaerophile bacterium that was isolated from newborn SPF mouse .
NCBI tax id
- NCBI tax id: 1622
- Matching level: species
strain history
- @ref: 22254
- history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany <- M. W. Hornef, RWTH Aachen, Germany; M5-8a
doi: 10.13145/bacdive130962.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Ligilactobacillus
- species: Ligilactobacillus murinus
- full scientific name: Ligilactobacillus murinus (Hemme et al. 1982) Zheng et al. 2020
synonyms
- @ref: 20215
- synonym: Lactobacillus murinus
@ref: 22254
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Ligilactobacillus
species: Ligilactobacillus murinus
full scientific name: Ligilactobacillus murinus (Hemme et al. 1982) Zheng et al. 2020
strain designation: M5-8a
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 94.095
colony morphology
- @ref: 22254
- incubation period: 2-3 days
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 22254 | MRS MEDIUM (DSMZ Medium 11) | yes | https://mediadive.dsmz.de/medium/11 | Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water |
| 22254 | LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) | yes | https://mediadive.dsmz.de/medium/381 | Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water |
culture temp
- @ref: 22254
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 22254
- oxygen tolerance: microaerophile
Isolation, sampling and environmental information
isolation
- @ref: 22254
- sample type: newborn SPF mouse (6-day-old)
- geographic location: Freiburg
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
- Cat1: #Host
- Cat2: #Mammals
- Cat3: #Muridae (Mouse/Rat)
taxonmaps
- @ref: 69479
- File name: preview.99_1521.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_871;97_1018;98_1201;99_1521&stattab=map
- Last taxonomy: Ligilactobacillus
- 16S sequence: KU196090
- Sequence Identity:
- Total samples: 39087
- soil counts: 571
- aquatic counts: 383
- animal counts: 37886
- plant counts: 247
Safety information
risk assessment
- @ref: 22254
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22254
- description: Ligilactobacillus murinus strain DSM 100193 16S ribosomal RNA gene, partial sequence
- accession: KU196090
- length: 1502
- database: nuccore
- NCBI tax ID: 1622
Genome sequences
- @ref: 66792
- description: Ligilactobacillus murinus DSM 100193
- accession: GCA_024622385
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1622
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 94.095 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 84.394 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 97.199 | yes |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 86.014 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 95.5 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 88 | no |
External links
@ref: 22254
culture collection no.: DSM 100193
straininfo link
- @ref: 89439
- straininfo: 404646
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22254 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100193 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100193) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 89439 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404646.1 |