Achromobacter mucicolens (DSM 29602, LMG 26685, CCUG 61961)

Name: Achromobacter mucicolens (DSM 29602, LMG 26685, CCUG 61961)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130143

Type strain

Strain Designation AU 13054, R-46658

Culture col. no. DSM 29602 LMG 26685 CCUG 61961 CIP 110844 AU 13054 1 more

NCBI tax ID(s) 1389922

Special Collections DSMZ CCUG CIP

History <- LMG <- P. Vandamme, Univ. Ghent, Belgium <- J. J. LiPuma, Univ. Michigan, USA; LMG 26685 CIP <- 2014, CCUG <- 2011, LMG

Links

Achromobacter mucicolens AU 13054 is an aerobe, Gram-negative, motile bacterium that was isolated from non-cystic fibrosis patient, sputum.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 376295

LMG 26685,CCUG 61961,DSM 29602

@ref 20215

Last LPSN update 2026-02-09 11:31:09

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Achromobacter

Species Achromobacter mucicolens

Full scientific name Achromobacter mucicolens Vandamme et al. 2013

BacDive ID	Other strains from **Achromobacter mucicolens** (7)	Type strain
136829	A. mucicolens CIP 60.81, ATCC 13138, JCM 20671, IAM 12594, ...
154540	A. mucicolens CCUG 54301
156473	A. mucicolens CCUG 61960, LMG 26684
156474	A. mucicolens CCUG 61962, LMG 26686
156475	A. mucicolens CCUG 61963, LMG 26687
156476	A. mucicolens CCUG 61964, LMG 26688
176934	A. mucicolens CT11-123, DSM 115945

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
125438	negative			95.918
121151	negative	rod-shaped

Colony morphology

@ref	Incubation period
21441	1-2 days
62756	1 day

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21441	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
121151	CIP Medium 72		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
21441	positive	growth	30
62756	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
62756	aerobe
125438	aerobe	90.809
125439	obligate aerobe	94.6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	+	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
21441	catalase	+	1.11.1.6
21441	cytochrome-c oxidase	+	1.9.3.1
68369	gelatinase	-		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
21441	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+/-	+	+	+	+	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	-
#Host Body Product	#Fluids	#Sputum

Isolation

@ref	Sample type	Sampling date	Country	Country ISO 3 Code	Continent	Isolation date
21441	non-cystic fibrosis patient, sputum		USA	USA	North America
62756	Human sputum, non-cystic fibrosis patient	2007	USA	USA	North America
121151	Human, Sputum, non-cystic fibrosis patient		United States of America	USA	North America	2007-01-02

Taxonmaps

69479

Global distribution of 16S sequence HE613446 (>99% sequence identity) for Achromobacter from Microbeatlas

Aquatic Samples	362
Soil Samples	273
Animal Samples	742
Plant Samples	143
Total Samples	1520

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21441	2	Risk group (German classification)
121151	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	LMG 26685 assembly for Achromobacter mucicolens LMG 26685	contig	GCA_902859725	1389922.4	8115439019	1389922	68.02

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21441	Achromobacter mucicolens partial 16S rRNA gene, type strain R-46658T	HE613446	1507		1389922

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Achromobacter mucicolens LMG 26685
NCBI: GCA_902859725

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	79.90	no
125439	motility	BacteriaNetⓘ	no	52.90	no
125439	gram_stain	BacteriaNetⓘ	negative	66.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Achromobacter mucicolens strain LMG 26685
PATRIC: 1389922.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.92	no
125438	anaerobic	anaerobicⓘ	no	98.07	yes
125438	spore-forming	spore-formingⓘ	no	89.80	no
125438	aerobic	aerobicⓘ	yes	90.81	yes
125438	thermophilic	thermophileⓘ	no	98.89	yes
125438	flagellated	motile2+ⓘ	yes	85.18	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Identification and characterization of a novel beta-lactamase gene, bla_AMZ-1, from Achromobacter mucicolens.	Zhang Y, Zhao J, Zhang G, Lin N, Sha Y, Lu J, Zhu T, Zhang X, Li Q, Zhang H, Lin X, Li K, Bao Q, Li D.	Front Microbiol	10.3389/fmicb.2023.1252427	2023
	Uptake of carbamazepine by rhizomes and endophytic bacteria of Phragmites australis.	Sauvetre A, Schroder P.	Front Plant Sci	10.3389/fpls.2015.00083	2015
Metabolism	Molecular and eco-physiological characterization of arsenic (As)-transforming Achromobacter sp. KAs 3-5(T) from As-contaminated groundwater of West Bengal, India.	Mohapatra B, Satyanarayana T, Sar P	J Environ Sci Health A Tox Hazard Subst Environ Eng	10.1080/10934529.2018.1462897	2018
Phylogeny	Achromobacter animicus sp. nov., Achromobacter mucicolens sp. nov., Achromobacter pulmonis sp. nov. and Achromobacter spiritinus sp. nov., from human clinical samples.	Vandamme P, Moore ER, Cnockaert M, De Brandt E, Svensson-Stadler L, Houf K, Spilker T, Lipuma JJ	Syst Appl Microbiol	10.1016/j.syapm.2012.10.003	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21441	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29602
#62756	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 61961
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121151	Collection of Institut Pasteur ; Curators of the CIP; CIP 110844
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Achromobacter mucicolens (DSM 29602, LMG 26685, CCUG 61961)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_902859725

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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