Name: Achromobacter mucicolens AU 13054
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130143

Type strain:

Species: Achromobacter mucicolens

Strain Designation: AU 13054, R-46658

Culture col. no.: DSM 29602, LMG 26685, CCUG 61961, CIP 110844

Strain history: CIP <- 2014, CCUG <- 2011, LMG

NCBI tax ID(s): 1389922 (species)

SI-ID 376295

LMG 26685, CCUG 61961, DSM 29602

Other strains from Achromobacter mucicolens

A. mucicolens CIP 60.81, ATCC 13138, JCM 20671, ...
A. mucicolens CCUG 54301
A. mucicolens CCUG 61960, LMG 26684
A. mucicolens CCUG 61962, LMG 26686
A. mucicolens CCUG 61963, LMG 26687
A. mucicolens CCUG 61964, LMG 26688

Section

Achromobacter mucicolens AU 13054 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from non-cystic fibrosis patient, sputum.

Gram-negative
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Alcaligenaceae*
	Genus	*Achromobacter*
	Species	**Achromobacter mucicolens**
	Full Scientific Name (LPSN)	Achromobacter mucicolens Vandamme et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #121151]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.996

[Ref.: #121151]	Cell shape	rod-shaped

[Ref.: #121151]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %96.423

[Ref.: #21441]	Incubation period	1-2 days

[Ref.: #62756]	Incubation period	1 day

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21441]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #21441]

Culture medium growth

[Ref.: #21441]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21441]

Culture medium composition

expand / minimize

[Ref.: #121151]

Culture medium

CIP Medium 72

[Ref.: #121151]

Culture medium growth

[Ref.: #121151]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #21441]			growth	30 °C
[Ref.: #62756]			growth	37 °C

[Ref.: #21441]	Temperature range	mesophilic
[Ref.: #62756]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #62756]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.968

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #21441]	catalase	+	1.11.1.6
[Ref.: #21441]	cytochrome-c oxidase	+	1.9.3.1
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #21441]	24064	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+/-	+	+	+	+	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21441]	Sample type/isolated from	non-cystic fibrosis patient, sputum
[Ref.: #21441]	Country	USA
[Ref.: #21441]	Country ISO 3 Code	USA
[Ref.: #21441]	Continent	North America

[Ref.: #62756]	Sample type/isolated from	Human sputum, non-cystic fibrosis patient
[Ref.: #62756]	Sampling date	2007
[Ref.: #62756]	Country	USA
[Ref.: #62756]	Country ISO 3 Code	USA
[Ref.: #62756]	Continent	North America

[Ref.: #121151]	Sample type/isolated from	Human, Sputum, non-cystic fibrosis patient
[Ref.: #121151]	Country	United States of America
[Ref.: #121151]	Country ISO 3 Code	USA
[Ref.: #121151]	Continent	North America
[Ref.: #121151]	Isolation date	2007-01-02
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host Body Product	#Fluids	#Sputum

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HE613446 (>99% sequence identity) for Achromobacter from Microbeatlas

Aquatic Samples	362
Soil Samples	273
Animal Samples	742
Plant Samples	143
Total Samples	1520

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21441]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #121151]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21441]	Achromobacter mucicolens partial 16S rRNA gene, type strain R-46658T	HE613446	1507	ENA	1389922 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Achromobacter mucicolens LMG 26685	GCA_902859725	contig	GenBank	1389922 tax ID	*
[Ref.: #66792]	Achromobacter mucicolens strain LMG 26685	1389922.4	wgs	PATRIC	1389922 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Achromobacter mucicolens strain LMG 26685 PATRIC: 1389922.9
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Achromobacter mucicolens strain LMG 26685 PATRIC: 1389922.4
[Ref.: #69480]	motile	yes	87.912	no
[Ref.: #69480]	gram-positive	no	98.472	no
[Ref.: #69480]	anaerobic	no	98.553	yes
[Ref.: #69480]	halophile	no	87.011	no
[Ref.: #69480]	spore-forming	no	96.709	no
[Ref.: #69480]	thermophile	no	99.381	no
[Ref.: #69480]	glucose-util	no	70.3	yes
[Ref.: #69480]	aerobic	yes	90.773	yes
[Ref.: #69480]	flagellated	no	61.092	no
[Ref.: #69480]	glucose-ferment	no	89.76	yes

Availability in culture collections External links

[Ref.: #21441]

Culture collection no.

DSM 29602, LMG 26685, CCUG 61961, CIP 110844

[Ref.: #88697]

SI-ID 376295

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Molecular and eco-physiological characterization of arsenic (As)-transforming Achromobacter sp. KAs 3-5(T) from As-contaminated groundwater of West Bengal, India.	Mohapatra B, Satyanarayana T, Sar P	J Environ Sci Health A Tox Hazard Subst Environ Eng	10.1080/10934529.2018.1462897	2018	*
Phylogeny	Achromobacter animicus sp. nov., Achromobacter mucicolens sp. nov., Achromobacter pulmonis sp. nov. and Achromobacter spiritinus sp. nov., from human clinical samples.	Vandamme P, Moore ER, Cnockaert M, De Brandt E, Svensson-Stadler L, Houf K, Spilker T, Lipuma JJ	Syst Appl Microbiol	10.1016/j.syapm.2012.10.003	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21441

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29602

#62756 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 61961

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88697

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID376295.1 )

#121151 Collection of Institut Pasteur ; Curators of the CIP; CIP 110844
* These data were automatically processed and therefore are not curated

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Achromobacter mucicolens strain LMG 26685

Achromobacter mucicolens strain LMG 26685

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