Strain identifier

BacDive ID: 130143

Type strain: Yes

Species: Achromobacter mucicolens

Strain Designation: AU 13054, R-46658

Strain history: CIP <- 2014, CCUG <- 2011, LMG

NCBI tax ID(s): 1389922 (species)

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General

@ref: 21441

BacDive-ID: 130143

DSM-Number: 29602

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative

description: Achromobacter mucicolens AU 13054 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from non-cystic fibrosis patient, sputum.

NCBI tax id

  • NCBI tax id: 1389922
  • Matching level: species

strain history

@refhistory
21441<- LMG <- P. Vandamme, Univ. Ghent, Belgium <- J. J. LiPuma, Univ. Michigan, USA; LMG 26685
121151CIP <- 2014, CCUG <- 2011, LMG

doi: 10.13145/bacdive130143.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Achromobacter
  • species: Achromobacter mucicolens
  • full scientific name: Achromobacter mucicolens Vandamme et al. 2013

@ref: 21441

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Achromobacter

species: Achromobacter mucicolens

full scientific name: Achromobacter mucicolens Vandamme et al. 2013

strain designation: AU 13054, R-46658

type strain: yes

Morphology

cell morphology

@refgram stainconfidencemotilitycell shape
69480negative99.996
6948096.423yes
121151negativeyesrod-shaped

colony morphology

@refincubation period
214411-2 days
627561 day

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21441NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
121151CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
21441positivegrowth30mesophilic
62756positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 62756
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.968

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
21441catalase+1.11.1.6
21441cytochrome-c oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
21441+-------------++/-++++

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling dateisolation date
21441non-cystic fibrosis patient, sputumUSAUSANorth America
62756Human sputum, non-cystic fibrosis patientUSAUSANorth America2007
121151Human, Sputum, non-cystic fibrosis patientUnited States of AmericaUSANorth America2007-01-02

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host Body Product#Fluids#Sputum

taxonmaps

  • @ref: 69479
  • File name: preview.99_710.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_7;96_9;97_9;98_570;99_710&stattab=map
  • Last taxonomy: Achromobacter
  • 16S sequence: HE613446
  • Sequence Identity:
  • Total samples: 1520
  • soil counts: 273
  • aquatic counts: 362
  • animal counts: 742
  • plant counts: 143

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
214412Risk group (German classification)
1211511Risk group (French classification)

Sequence information

16S sequences

  • @ref: 21441
  • description: Achromobacter mucicolens partial 16S rRNA gene, type strain R-46658T
  • accession: HE613446
  • length: 1507
  • database: ena
  • NCBI tax ID: 1389922

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Achromobacter mucicolens LMG 26685GCA_902859725contigncbi1389922
66792Achromobacter mucicolens strain LMG 266851389922.4wgspatric1389922

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes87.912no
gram-positiveno98.472no
anaerobicno98.553yes
halophileno87.011no
spore-formingno96.709no
thermophileno99.381no
glucose-utilno70.3yes
aerobicyes90.773yes
flagellatedno61.092no
glucose-fermentno89.76yes

External links

@ref: 21441

culture collection no.: DSM 29602, LMG 26685, CCUG 61961, CIP 110844

straininfo link

  • @ref: 88697
  • straininfo: 376295

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23219252Achromobacter animicus sp. nov., Achromobacter mucicolens sp. nov., Achromobacter pulmonis sp. nov. and Achromobacter spiritinus sp. nov., from human clinical samples.Vandamme P, Moore ER, Cnockaert M, De Brandt E, Svensson-Stadler L, Houf K, Spilker T, Lipuma JJSyst Appl Microbiol10.1016/j.syapm.2012.10.0032012Achromobacter/*classification/genetics/*isolation & purification, Bacterial Proteins/genetics, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, Gram-Negative Bacterial Infections/*microbiology, Humans, Molecular Sequence Data, Multilocus Sequence Typing, PhylogenyPathogenicity
Metabolism29719162Molecular and eco-physiological characterization of arsenic (As)-transforming Achromobacter sp. KAs 3-5(T) from As-contaminated groundwater of West Bengal, India.Mohapatra B, Satyanarayana T, Sar PJ Environ Sci Health A Tox Hazard Subst Environ Eng10.1080/10934529.2018.14628972018Achromobacter/*genetics/*metabolism, Arsenic/*analysis/*metabolism, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Groundwater/*chemistry/*microbiology, India, Phylogeny, RNA, Ribosomal, 16S/analysis/genetics, Sequence Analysis, DNA, Water Pollutants, Chemical/analysis/metabolismPhylogeny

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21441Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29602Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29602)
62756Curators of the CCUGhttps://www.ccug.se/strain?id=61961Culture Collection University of Gothenburg (CCUG) (CCUG 61961)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
88697Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID376295.1
121151Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110844Collection of Institut Pasteur (CIP 110844)