Achromobacter pulmonis (DSM 29617, CCUG 61972, LMG 26696)

Name: Achromobacter pulmonis (DSM 29617, CCUG 61972, LMG 26696)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130144

Type strain

Strain Designation E38/27-S, R-16442

Culture col. no. DSM 29617 CCUG 61972 LMG 26696 CIP 110842 E38/27-S 1 more

NCBI tax ID(s) 1389932

Special Collections DSMZ CCUG CIP

History <- LMG <- P. Vandamme, Univ. Ghent, Belgium <- J. Gigi; LMG 26696 CIP <- 2014, CCUG <- 2011, LMG

Links

Achromobacter pulmonis E38/27-S is an aerobe, Gram-negative, motile bacterium that was isolated from cystic fibrosis patient, sputum.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 94826

LMG 26696,CCUG 61972,DSM 29617

@ref 20215

Last LPSN update 2026-02-09 11:31:09

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Achromobacter

Species Achromobacter pulmonis

Full scientific name Achromobacter pulmonis Vandamme et al. 2013

BacDive ID	Other strains from **Achromobacter pulmonis** (3)	Type strain
154048	A. pulmonis CCUG 52128
156481	A. pulmonis CCUG 61971, LMG 26788
156482	A. pulmonis CCUG 61973, LMG 26697

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125438	negative		97.313
125439	negative		92.3
122047	negative	rod-shaped

Colony morphology

@ref	Incubation period
21442	1-2 days
62767	1 day

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
39703	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
21442	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
122047	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
21442	positive	growth	30
39703	positive	growth	30
62767	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
62767	aerobe
125438	aerobe	91.336
125439	obligate aerobe	90.2

Spore formation

@ref	Spore formation	Confidence
125439		95.7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	+	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
21442	catalase	+	1.11.1.6
21442	cytochrome-c oxidase	+	1.9.3.1
68369	gelatinase	-		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
21442	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+/-	+	+	+	+	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Disease	#Cystic fibrosis
#Infection	#Patient	-
#Host Body Product	#Fluids	#Sputum

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
21442	cystic fibrosis patient, sputum	Belgium	BEL	Europe
62767	human sputum, CF patient	Belgium	BEL	Europe
122047	Human, Sputum	Belgium	BEL	Europe

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
21442	yes, in single cases	1	Risk group (German classification)
122047		1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	LMG 26696 assembly for Achromobacter pulmonis LMG 26696	contig	GCA_902859765	1389932.4	3003583997	1389932	59.69

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Achromobacter pulmonis partial 16S rRNA gene, type strain R-16442T	HE798552	1489		1389932

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Achromobacter pulmonis LMG 26696
NCBI: GCA_902859765

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.70	no
125439	motility	BacteriaNetⓘ	yes	83.60	no
125439	gram_stain	BacteriaNetⓘ	negative	92.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	90.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Achromobacter pulmonis strain LMG 26696
PATRIC: 1389932.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.31	no
125438	anaerobic	anaerobicⓘ	no	98.45	no
125438	spore-forming	spore-formingⓘ	no	89.70	no
125438	aerobic	aerobicⓘ	yes	91.34	yes
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	yes	86.02	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Gut bacterial type III secretion systems aggravate colitis in mice and serve as biomarkers of Crohn's disease.	Xu J, Li P, Li Z, Liu S, Guo H, Lesser CF, Ke J, Zhao W, Mou X.	EBioMedicine	10.1016/j.ebiom.2024.105296	2024
	Discovery, Characterization, and Bioactivity of the Achromonodins: Lasso Peptides Encoded by Achromobacter.	Carson DV, Zhang Y, So L, Cheung-Lee WL, Cartagena AJ, Darst SA, Link AJ.	J Nat Prod	10.1021/acs.jnatprod.3c00536	2023
Phylogeny	Achromobacter aloeverae sp. nov., isolated from the root of Aloe vera (L.) Burm.f.	Kuncharoen N, Muramatsu Y, Shibata C, Kamakura Y, Nakagawa Y, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001566	2017
Phylogeny	Achromobacter animicus sp. nov., Achromobacter mucicolens sp. nov., Achromobacter pulmonis sp. nov. and Achromobacter spiritinus sp. nov., from human clinical samples.	Vandamme P, Moore ER, Cnockaert M, De Brandt E, Svensson-Stadler L, Houf K, Spilker T, Lipuma JJ	Syst Appl Microbiol	10.1016/j.syapm.2012.10.003	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21442	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29617
#39703	; Curators of the CIP;
#62767	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 61972
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#122047	Collection of Institut Pasteur ; Curators of the CIP; CIP 110842
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Achromobacter pulmonis (DSM 29617, CCUG 61972, LMG 26696)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_902859765

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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