Achromobacter animicus (DSM 29601, CCUG 61966, LMG 26690)

Name: Achromobacter animicus (DSM 29601, CCUG 61966, LMG 26690)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130142

Type strain

Strain Designation AU15230, AU 15230, R-46662

Culture col. no. DSM 29601 CCUG 61966 LMG 26690 AU15230 CIP 110841 2 more

NCBI tax ID(s) 1389935

Special Collections DSMZ CCUG CIP

History DSMZ <- LMG <- P. A. van Damme, Univ. Ghent, Belgium <- J. J. LiPuma, Univ. Michigan, USA; AU15230 CIP <- 2014, CCUG <- 2011, LMG

Links

Achromobacter animicus AU15230 is an aerobe, Gram-negative, motile bacterium that was isolated from non-cystic fibrosis patient, sputum.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 376292

LMG 26690,CCUG 61966,DSM 29601

@ref 20215

Last LPSN update 2026-05-29 08:37:18

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Achromobacter

Species Achromobacter animicus

Full scientific name Achromobacter animicus Vandamme et al. 2013

BacDive ID	Other strains from **Achromobacter animicus** (3)	Type strain
156477	A. animicus CCUG 61965, LMG 26689
156478	A. animicus CCUG 61967, LMG 26691
176466	A. animicus CT11-117, DSM 115908

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
125438	negative			95.932
116395	negative	rod-shaped

Colony morphology

@ref	Incubation period
21440	1-2 days
62761	1 day

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
21440	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
39702	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116395	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
21440	positive	growth	30
39702	positive	growth	30
62761	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
62761	aerobe
125438	aerobe	90.964
125439	obligate aerobe	94.605

Spore formation

@ref	Spore formation	Confidence
125439		96.275

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	+	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
21440	catalase	+	1.11.1.6
21440	cytochrome-c oxidase	+	1.9.3.1
68369	gelatinase	-		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
21440	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	+	+	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	-
#Host Body Product	#Fluids	#Sputum

Isolation

@ref	Sample type	Host species	Sampling date	Country	Country ISO 3 Code	Continent	Isolation date
21440	non-cystic fibrosis patient, sputum	Homo sapiens		USA	USA	North America
62761	Human sputum, non-cystic fibrosis patient	Homo sapiens	2008	USA	USA	North America
116395	Human, Sputum, non-cystic fibrosis patient	Homo sapiens		United States of America	USA	North America	2008-01-02

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
21440	yes, in single cases	1	Risk group (German classification)
116395		1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	LMG 26690 assembly for Achromobacter animicus LMG 26690	contig	GCA_902859585	1389935.3	2902242375	1389935	68.42

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21440	Achromobacter animicus partial 16S rRNA gene, type strain R-46662T	HE613448	1507		1389935

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: LMG 26690 assembly for Achromobacter animicus LMG 26690
NCBI: GCA_902859585

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.61	no
125439	motility	BacteriaNetⓘ	yes	63.14	no
125439	gram_stain	BacteriaNetⓘ	negative	66.80	no
125439	spore_formation	BacteriaNetⓘ	no	96.28	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Achromobacter animicus strain LMG 26690
PATRIC: 1389935.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.93	no
125438	anaerobic	anaerobicⓘ	no	98.11	no
125438	spore-forming	spore-formingⓘ	no	88.36	no
125438	aerobic	aerobicⓘ	yes	90.96	no
125438	thermophilic	thermophileⓘ	no	98.96	no
125438	flagellated	motile2+ⓘ	yes	83.61	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Discovery, Characterization, and Bioactivity of the Achromonodins: Lasso Peptides Encoded by Achromobacter.	Carson DV, Zhang Y, So L, Cheung-Lee WL, Cartagena AJ, Darst SA, Link AJ.	J Nat Prod	10.1021/acs.jnatprod.3c00536	2023
Metabolism	Molecular and eco-physiological characterization of arsenic (As)-transforming Achromobacter sp. KAs 3-5(T) from As-contaminated groundwater of West Bengal, India.	Mohapatra B, Satyanarayana T, Sar P	J Environ Sci Health A Tox Hazard Subst Environ Eng	10.1080/10934529.2018.1462897	2018
Phylogeny	Achromobacter animicus sp. nov., Achromobacter mucicolens sp. nov., Achromobacter pulmonis sp. nov. and Achromobacter spiritinus sp. nov., from human clinical samples.	Vandamme P, Moore ER, Cnockaert M, De Brandt E, Svensson-Stadler L, Houf K, Spilker T, Lipuma JJ	Syst Appl Microbiol	10.1016/j.syapm.2012.10.003	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21440	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29601
#39702	; Curators of the CIP;
#62761	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 61966
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#116395	Collection of Institut Pasteur ; Curators of the CIP; CIP 110841
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Achromobacter animicus (DSM 29601, CCUG 61966, LMG 26690)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_902859585

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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