Name: Pseudoalteromonas espejiana 261
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 12684

Type strain:

Species: Pseudoalteromonas espejiana

Strain Designation: 261

Culture col. no.: DSM 9414, ATCC 29659, CCUG 16147, IAM 12640, NCIMB 2127, LMG 2866, JCM 20705, CIP 104112, NBRC 102222

Strain history: CIP <- 1994, NCIMB <- ATCC <- P. Baumann: strain 261 <- K.Y. Chan

NCBI tax ID(s): 1314869 (strain), 28107 (species)

SI-ID 92111

LMG 2866, ATCC 29659, CCUG 16147, NCMB 2127, CIP 104112, NCIMB 2127, DSM 9414, IAM 12640, CECT 5002, NCIB 2127, NBRC 102222, JCM 20705

Special Collections

Section

Pseudoalteromonas espejiana 261 is a Gram-negative bacterium that was isolated from seawater.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Pseudoalteromonadaceae*
	Genus	*Pseudoalteromonas*
	Species	**Pseudoalteromonas espejiana**
	Full Scientific Name (LPSN)	Pseudoalteromonas espejiana (Chan et al. 1978) Gauthier et al. 1995

Synonym

Alteromonas espejiana

Information on morphological and physiological properties Morphology

[Ref.: #119133]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #119133]	Cell shape	rod-shaped

[Ref.: #119133]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3569]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #3569]

Culture medium growth

[Ref.: #3569]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3569]

Culture medium composition

expand / minimize

[Ref.: #3569]

Culture medium

SEAWATER YEAST PEPTONE AGAR (DSMZ Medium 243)

[Ref.: #3569]

Culture medium growth

[Ref.: #3569]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3569]

Culture medium composition

expand / minimize

[Ref.: #42028]

Culture medium

Marine agar (MA)

[Ref.: #42028]

Culture medium growth

[Ref.: #42028]

Culture medium composition

expand / minimize

[Ref.: #119133]

Culture medium

CIP Medium 13

[Ref.: #119133]

Culture medium growth

[Ref.: #119133]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #3569]		growth	28 °C
[Ref.: #42028]		growth	22 °C
[Ref.: #46449]		growth	30 °C
[Ref.: #67770]		growth	25 °C
[Ref.: #119133]		growth	5-22 °C
[Ref.: #119133]	no	growth	41 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #119133]	esculin ChEBI	+	hydrolysis
[Ref.: #119133]	nitrate ChEBI	-	reduction
[Ref.: #119133]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #119133]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #119133]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #119133]	beta-galactosidase	+	3.2.1.23
[Ref.: #119133]	caseinase	+	3.4.21.50
[Ref.: #119133]	catalase	+	1.11.1.6
[Ref.: #119133]	gelatinase	+
[Ref.: #119133]	lecithinase	+
[Ref.: #119133]	lysine decarboxylase	-	4.1.1.18
[Ref.: #119133]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119133]	oxidase	+
[Ref.: #119133]	urease	-	3.5.1.5

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #119133]	552	not determinedn.d.	+	+	+	+	-	-	+	+	-	+	+	+	+	+	+	+	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	+	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3569]	Sample type/isolated from	seawater
[Ref.: #3569]	Geographic location (country and/or sea, region)	Nothern California
[Ref.: #3569]	Country	USA
[Ref.: #3569]	Country ISO 3 Code	USA
[Ref.: #3569]	Continent	North America

[Ref.: #46449]	Sample type/isolated from	Seawater
[Ref.: #46449]	Geographic location (country and/or sea, region)	Northern California
[Ref.: #46449]	Country	USA
[Ref.: #46449]	Country ISO 3 Code	USA
[Ref.: #46449]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Seawater
[Ref.: #67770]	Geographic location (country and/or sea, region)	northern California
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America

[Ref.: #119133]	Sample type/isolated from	Environment, Seawater
[Ref.: #119133]	Geographic location (country and/or sea, region)	California
[Ref.: #119133]	Country	United States of America
[Ref.: #119133]	Country ISO 3 Code	USA
[Ref.: #119133]	Continent	North America
[Ref.: #119133]	Isolation date	1975
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB681736 (>99% sequence identity) for Pseudoalteromonas from Microbeatlas

Aquatic Samples	2792
Soil Samples	24
Animal Samples	384
Plant Samples	22
Total Samples	3222

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3569]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119133]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #124043]	Pseudoalteromonas espejiana DSM 9414 strain ATCC 29659 16S ribosomal RNA gene, partial sequence.	OQ626012	1307	GenBank ENA	1314869 tax ID	*
[Ref.: #20218]	Alteromonas espejiana 16S rRNA	D11171	211	GenBank ENA	28107 tax ID	*
[Ref.: #20218]	Alteromonas espejiana 16S rRNA	D11220	150	GenBank ENA	28107 tax ID	*
[Ref.: #20218]	Alteromonas espejiana 16S rRNA	D11269	194	GenBank ENA	28107 tax ID	*
[Ref.: #20218]	Pseudoalteromonas espejiana gene for 16S rRNA, partial sequence, strain: NBRC 102222	AB681736	1461	GenBank ENA	28107 tax ID	*
[Ref.: #20218]	A.espejiana 16S rRNA gene (NCIMB 2127T)	X82143	1413	GenBank ENA	28107 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudoalteromonas espejiana NBRC 102222	GCA_007989585	contig	GenBank ENA	28107 tax ID
[Ref.: #66792]	Pseudoalteromonas espejiana DSM 9414	GCA_002221525	complete	GenBank ENA	1314869 tax ID	*
[Ref.: #66792]	Pseudoalteromonas espejiana strain ATCC 29659	28107.3	complete	PATRIC	28107 tax ID	*
[Ref.: #66792]	Pseudoalteromonas espejiana strain NBRC 102222	28107.7	wgs	PATRIC	28107 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudoalteromonas espejiana DSM 9414 ATCC 29659 NCBI: GCA_002221525.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudoalteromonas espejiana DSM 9414 ATCC 29659 NCBI: GCA_002221525.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	100	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.207	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	75.422	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	86.326	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.5	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	88.209	no

Availability in culture collections External links

[Ref.: #3569]

Culture collection no.

DSM 9414, ATCC 29659, CCUG 16147, IAM 12640, NCIMB 2127, LMG 2866, JCM 20705, CIP 104112, NBRC 102222

[Ref.: #81896]

SI-ID 92111

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete genome sequence of Pseudoalteromonas espejiana DSM9414(T), an amino-acid-requiring strain from seawater.	Rong JC, Cha QQ, Ren XB, Xie BB, Song XY	Mar Genomics	10.1016/j.margen.2017.08.006	2017	*
Enzymology	Production and characterization of a novel thermostable extracellular agarase from Pseudoalteromonas hodoensis newly isolated from the West Sea of South Korea.	Chi WJ, Park JS, Kang DK, Hong SK	Appl Biochem Biotechnol	10.1007/s12010-014-0958-3	2014	*
Phylogeny	Assignment of Alteromonas elyakovii KMM 162T and five strains isolated from spot-wounded fronds of Laminaria japonica to Pseudoalteromonas elyakovii comb. nov. and the extended description of the species.	Sawabe T, Tanaka R, Iqbal MM, Tajima K, Ezura Y, Ivanova EP, Christen R	Int J Syst Evol Microbiol	10.1099/00207713-50-1-265	2000	*

References

#3569

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9414

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#42028 ; Curators of the CIP;
#46449 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 16147

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81896

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92111.1 )

#119133 Collection of Institut Pasteur ; Curators of the CIP; CIP 104112

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Pseudoalteromonas espejiana DSM 9414 ATCC 29659

Pseudoalteromonas espejiana DSM 9414 ATCC 29659

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