Archive BacDiveID:10.13145/bacdive12684.20230509.8.1

Strain identifier

BacDive ID: 12684

Type strain:

Species: Pseudoalteromonas espejiana

Strain Designation: 261

Strain history: CIP <- 1994, NCIMB <- ATCC <- P. Baumann: strain 261 <- K.Y. Chan

NCBI tax ID(s): 1314869 (strain), 28107 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 3569

BacDive-ID: 12684

DSM-Number: 9414

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile

description: Pseudoalteromonas espejiana 261 is a mesophilic, motile bacterium that was isolated from seawater.

NCBI tax id

NCBI tax id	Matching level
28107	species
1314869	strain

strain history

@ref	history
3569	<- NCIMB
67770	IAM 12640 <-- ATCC 29659 <-- P. Baumann 261 <-- K. Y. Chan.
119133	CIP <- 1994, NCIMB <- ATCC <- P. Baumann: strain 261 <- K.Y. Chan

doi: 10.13145/bacdive12684.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Alteromonadales
family: Pseudoalteromonadaceae
genus: Pseudoalteromonas
species: Pseudoalteromonas espejiana
full scientific name: Pseudoalteromonas espejiana (Chan et al. 1978) Gauthier et al. 1995
synonyms
- @ref: 20215
- synonym: Alteromonas espejiana

@ref: 3569

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Pseudoalteromonadaceae

genus: Pseudoalteromonas

species: Pseudoalteromonas espejiana

full scientific name: Pseudoalteromonas espejiana (Chan et al. 1978) Gauthier et al. 1995

strain designation: 261

type strain: yes

Morphology

cell morphology

@ref	motility	confidence	gram stain	cell shape
69480	yes	98.514
69480		99.998	negative
119133	yes		negative	rod-shaped

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
3569	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	yes	https://mediadive.dsmz.de/medium/514	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
3569	SEAWATER YEAST PEPTONE AGAR (DSMZ Medium 243)	yes	https://mediadive.dsmz.de/medium/243	Name: SEAWATER YEAST PEPTONE AGAR (DSMZ Medium 243) Composition: Agar 12.0 g/l Peptone 5.0 g/l Yeast extract 3.0 g/l Sea water Distilled water
42028	Marine agar (MA)	yes		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
119133	CIP Medium 13	yes	https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@ref	growth	type	temperature	range
3569	positive	growth	28	mesophilic
42028	positive	growth	22	psychrophilic
46449	positive	growth	30	mesophilic
67770	positive	growth	25	mesophilic
119133	positive	growth	5-22	psychrophilic
119133	no	growth	41	thermophilic

Physiology and metabolism

spore formation

@ref	spore formation	confidence
69481	no	100
69480	no	99.983

metabolite utilization

@ref	Chebi-ID	metabolite	utilization activity	kind of utilization tested
119133	4853	esculin	+	hydrolysis
119133	17632	nitrate	-	reduction
119133	16301	nitrite	-	reduction

metabolite production

@ref: 119133
Chebi-ID: 35581
metabolite: indole
production: no

enzymes

@ref	value	activity	ec
119133	oxidase	+
119133	beta-galactosidase	+	3.2.1.23
119133	alcohol dehydrogenase	-	1.1.1.1
119133	gelatinase	+
119133	caseinase	+	3.4.21.50
119133	catalase	+	1.11.1.6
119133	lecithinase	+
119133	lysine decarboxylase	-	4.1.1.18
119133	ornithine decarboxylase	-	4.1.1.17
119133	urease	-	3.5.1.5

API biotype100

@ref	GLU	FRU	GAL	TRE	MNE	SBE	MEL	SAC	RAF	MTE	MAL	LAC	LTE	MbGa	MaGa	CEL	GEN	MbGu	ESC	RIB	ARA	XYL	PLE	RHA	FUC	MLZ	DARL	LARL	XLT	DUL	TAG	GLY	INO	MAN	MTL	TUR	SOR	ADO	HBG	LYX	ERY	MDG	3MDG	SAT	MUC	LTAT	DTAT	MTAT	DMLT	LMLT	CATE	TATE	TTE	CIT	GRT	GAT	2KG	5KG	TRY	NAG	GNT	PAC	PAT	pOBE	QAT	GTE	mOBE	BAT	PPAT	CMT	TGE	BET	PCE	ABT	HIN	LAT	CAP	CYT	HIS	SUC	FUM	GRE	GYT	AVT	ETN	TTN	GLN	ITA	3OBU	APT	GTT	PRO	DALA	LALA	SER	MNT	PROP	TYR	2KT
119133	+	+	+	+	-	-	+	+	-	+	+	+	+	+	+	+	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	+	+	-	-	-	-

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent	isolation date
3569	seawater	Nothern California	USA	USA	North America
46449	Seawater	Northern California	USA	USA	North America
67770	Seawater	northern California	USA	USA	North America
119133	Environment, Seawater	California	United States of America	USA	North America	1975

isolation source categories

Cat1: #Environmental
Cat2: #Aquatic
Cat3: #Marine

taxonmaps

@ref: 69479
File name: preview.99_1002.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_57;96_122;97_129;98_145;99_1002&stattab=map
Last taxonomy: Pseudoalteromonas
16S sequence: AB681736
Sequence Identity:
Total samples: 3222
soil counts: 24
aquatic counts: 2792
animal counts: 384
plant counts: 22

Safety information

risk assessment

@ref	biosafety level	biosafety level comment
3569	1	Risk group (German classification)
119133	1	Risk group (French classification)

Sequence information

16S sequences

@ref	description	accession	length	database	NCBI tax ID
20218	Alteromonas espejiana 16S rRNA	D11171	211	ena	28107
20218	Alteromonas espejiana 16S rRNA	D11220	150	ena	28107
20218	Alteromonas espejiana 16S rRNA	D11269	194	ena	28107
20218	Pseudoalteromonas espejiana gene for 16S rRNA, partial sequence, strain: NBRC 102222	AB681736	1461	ena	28107
20218	A.espejiana 16S rRNA gene (NCIMB 2127T)	X82143	1413	ena	28107

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Pseudoalteromonas espejiana DSM 9414	GCA_002221525	complete	ncbi	1314869
66792	Pseudoalteromonas espejiana strain ATCC 29659	28107.3	complete	patric	28107
66792	Pseudoalteromonas espejiana strain NBRC 102222	28107.7	wgs	patric	28107
67770	Pseudoalteromonas espejiana NBRC 102222	GCA_007989585	contig	ncbi	28107

Genome-based predictions

predictions

trait	prediction	confidence	training_data
spore-forming	no	100	no
flagellated	yes	90.894	no
gram-positive	no	98.982	no
anaerobic	no	96.834	no
aerobic	yes	87.627	no
halophile	yes	58.067	no
spore-forming	no	95.305	no
thermophile	no	99.14	yes
glucose-util	yes	93.081	no
motile	yes	91.66	no
glucose-ferment	no	78.647	no

External links

@ref: 3569

culture collection no.: DSM 9414, ATCC 29659, CCUG 16147, IAM 12640, NCIMB 2127, LMG 2866, JCM 20705, CIP 104112, NBRC 102222

straininfo link

@ref: 81896
straininfo: 92111

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	10826813	Assignment of Alteromonas elyakovii KMM 162T and five strains isolated from spot-wounded fronds of Laminaria japonica to Pseudoalteromonas elyakovii comb. nov. and the extended description of the species.	Sawabe T, Tanaka R, Iqbal MM, Tajima K, Ezura Y, Ivanova EP, Christen R	Int J Syst Evol Microbiol	10.1099/00207713-50-1-265	2000	Alteromonas/classification/cytology/genetics/physiology, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Gammaproteobacteria/classification/cytology/genetics/physiology, Laminaria/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Water Microbiology	Genetics
Enzymology	24879592	Production and characterization of a novel thermostable extracellular agarase from Pseudoalteromonas hodoensis newly isolated from the West Sea of South Korea.	Chi WJ, Park JS, Kang DK, Hong SK	Appl Biochem Biotechnol	10.1007/s12010-014-0958-3	2014	Agar/metabolism, Enzyme Stability, Extracellular Space/enzymology, Glycoside Hydrolases/biosynthesis/chemistry/metabolism, Hydrolysis, Phenotype, Phylogeny, Pseudoalteromonas/classification/cytology/enzymology/isolation & purification, Republic of Korea, Seawater/microbiology, *Temperature	Phylogeny
Genetics	28869183	Complete genome sequence of Pseudoalteromonas espejiana DSM9414(T), an amino-acid-requiring strain from seawater.	Rong JC, Cha QQ, Ren XB, Xie BB, Song XY	Mar Genomics	10.1016/j.margen.2017.08.006	2017	California, Genome, Bacterial, Pseudoalteromonas/genetics, Whole Genome Sequencing

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
3569	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9414)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-9414
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.		10.1016/j.syapm.2013.11.002	StrainInfo introduces electronic passports for microorganisms.	Syst Appl Microbiol. 37: 42-50 2014	24321274
42028	Curators of the CIP		https://brclims.pasteur.fr/brcWeb/souche/detail/1/15985
46449	Curators of the CCUG	Culture Collection University of Gothenburg (CCUG) (CCUG 16147)	https://www.ccug.se/strain?id=16147
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481	Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch		10.21203/rs.3.rs-2527258/v1	Predictions based on the model GenomeNet Sporulation v. 1
81896	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID92111.1	StrainInfo: A central database for resolving microbial strain identifiers
119133	Curators of the CIP	Collection of Institut Pasteur (CIP 104112)	https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104112

General

NCBI tax id

strain history

Name and taxonomic classification

LPSN

synonyms

Morphology

cell morphology

Culture and growth conditions

culture medium

culture temp

Physiology and metabolism

spore formation

metabolite utilization

metabolite production

enzymes

API biotype100

Isolation, sampling and environmental information

isolation

isolation source categories

taxonmaps

Safety information

risk assessment

Sequence information

16S sequences

Genome sequences

Genome-based predictions

predictions

External links

straininfo link

literature

Reference