Name: Pseudoalteromonas carrageenovora DSM 6820
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 12683

Type strain:

Species: Pseudoalteromonas carrageenovora

Culture col. no.: DSM 6820, ATCC 43555, IAM 12662, IFO 12985, NBRC 12985, NCIMB 302, JCM 8851, CGMCC 1.2912, CGMCC 1.6485, CIP 103674

Strain history: CIP <- 1993, M. Akagawa-Matsushita, Kitakyushu, Japan <- 1982, IFO: strain 12985, Pseudomonas carrageenovora <- W. Yaphe, Canada

NCBI tax ID(s): 1314868 (strain), 227 (species)

SI-ID 264316

LMG 2154, NCMB 302, ATCC 43555, IAM 12662, IFO 12985, NCIMB 302, CIP 103674, JCM 8851, DSM 6820, NBRC 12985

Section

Pseudoalteromonas carrageenovora DSM 6820 is a psychrophilic, motile bacterium that was isolated from sample of sea water and marine algae.

motile
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Pseudoalteromonadaceae*
	Genus	*Pseudoalteromonas*
	Species	**Pseudoalteromonas carrageenovora**
	Full Scientific Name (LPSN)	Pseudoalteromonas carrageenovora (Akagawa-Matsushita et al. 1992) Gauthier et al. 1995

Synonym

Alteromonas carrageenovora

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #69480]	Motility	yes Confidence in %98.184

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2839]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #2839]

Culture medium growth

[Ref.: #2839]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2839]

Culture medium composition

expand / minimize

[Ref.: #2839]

Culture medium

SEA WATER AGAR (DSMZ Medium 246)

[Ref.: #2839]

Culture medium growth

[Ref.: #2839]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2839]

Culture medium composition

expand / minimize

[Ref.: #42022]

Culture medium

Marine agar (MA)

[Ref.: #42022]

Culture medium growth

[Ref.: #42022]

Culture medium composition

expand / minimize

[Ref.: #117195]

Culture medium

CIP Medium 13

[Ref.: #117195]

Culture medium growth

[Ref.: #117195]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #2839]	growth	20 °C
[Ref.: #42022]	growth	22 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #2839]	Temperature range	psychrophilic
[Ref.: #42022]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.978

[Ref.: #2839]	Name of produced compound	kappa carrageenase
[Ref.: #2839]	Name of produced compound	lambda carrageenase
[Ref.: #2839]	Name of produced compound	carrageenase
[Ref.: #67770]	Name of produced compound	Carageenanase

[Ref.: #67770]

Observation

quinones: Q-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2839]	Sample type/isolated from	sample of sea water and marine algae
[Ref.: #2839]	Geographic location (country and/or sea, region)	Nova scotia, Halifax
[Ref.: #2839]	Country	Canada
[Ref.: #2839]	Country ISO 3 Code	CAN
[Ref.: #2839]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Red alga (Cow Bay
[Ref.: #67770]	Geographic location (country and/or sea, region)	Nova Scotia
[Ref.: #67770]	Country	Canada
[Ref.: #67770]	Country ISO 3 Code	CAN
[Ref.: #67770]	Continent	North America

[Ref.: #117195]	Sample type/isolated from	Other, Seaweed
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Algae	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X82136 (>99% sequence identity) for Pseudoalteromonas from Microbeatlas

Aquatic Samples	2792
Soil Samples	24
Animal Samples	384
Plant Samples	22
Total Samples	3222

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2839]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #117195]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2839]	Pseudoalteromonas carrageenovora 16S rRNA gene, type strain IAM 12662T	X82136	1423	ENA	227 tax ID
[Ref.: #20218]	Pseudoalteromonas carrageenovora gene for 16S rRNA, partial sequence, strain: NBRC 12985	AB680359	1461	ENA	227 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudoalteromonas carrageenovora NBRC 12985	GCA_006539245	contig	GenBank	227 tax ID
[Ref.: #66792]	Pseudoalteromonas carrageenovora IAM 12662 ATCC43555T	GCA_900239935	chromosome	GenBank	1314868 tax ID	*
[Ref.: #66792]	Pseudoalteromonas carrageenovora IAM 12662	GCA_014925295	chromosome	GenBank	1314868 tax ID	*
[Ref.: #66792]	Pseudoalteromonas carrageenovora IAM 12662	1314868.5	wgs	PATRIC	1314868 tax ID	*
[Ref.: #66792]	Pseudoalteromonas carrageenovora IAM 12662 strain ATCC 43555 strain ATCC43555T	1314868.3	complete	PATRIC	1314868 tax ID	*
[Ref.: #66792]	Pseudoalteromonas carrageenovora strain NBRC 12985	227.5	wgs	PATRIC	227 tax ID	*

[Ref.: #67770]

GC-content

39.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudoalteromonas carrageenovora IAM 12662 strain ATCC 43555 strain ATCC43555T PATRIC: 1314868.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudoalteromonas carrageenovora IAM 12662 strain ATCC 43555 strain ATCC43555T PATRIC: 1314868.3
[Ref.: #69480]	motile	yes	92.424	no
[Ref.: #69480]	gram-positive	no	99.08	no
[Ref.: #69480]	anaerobic	no	97.834	no
[Ref.: #69480]	halophile	yes	62.661	no
[Ref.: #69480]	spore-forming	no	96.459	no
[Ref.: #69480]	glucose-util	yes	91.536	no
[Ref.: #69480]	flagellated	yes	89.354	no
[Ref.: #69480]	thermophile	no	99.233	yes
[Ref.: #69480]	aerobic	yes	90.008	no
[Ref.: #69480]	glucose-ferment	no	77.721	no

Availability in culture collections External links

[Ref.: #2839]

Culture collection no.

DSM 6820, ATCC 43555, IAM 12662, IFO 12985, NBRC 12985, NCIMB 302, JCM 8851, CGMCC 1.2912, CGMCC 1.6485, CIP 103674

[Ref.: #81894]	SI-ID 264316	*
[Ref.: #81895]	SI-ID 312172	*

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Evolutionary Evidence of Algal Polysaccharide Degradation Acquisition by Pseudoalteromonas carrageenovora 9(T) to Adapt to Macroalgal Niches.	Gobet A, Barbeyron T, Matard-Mann M, Magdelenat G, Vallenet D, Duchaud E, Michel G	Front Microbiol	10.3389/fmicb.2018.02740	2018	*
Enzymology	Structural insights into marine carbohydrate degradation by family GH16 kappa-carrageenases.	Matard-Mann M, Bernard T, Leroux C, Barbeyron T, Larocque R, Prechoux A, Jeudy A, Jam M, Nyvall Collen P, Michel G, Czjzek M	J Biol Chem	10.1074/jbc.M117.808279	2017	*
Genetics	The O-chain structure from the LPS of marine halophilic bacterium Pseudoalteromonas carrageenovora-type strain IAM 12662T.	Silipo A, Molinaro A, Nazarenko EL, Gorshkova RP, Ivanova EP, Lanzetta R, Parrilli M	Carbohydr Res	10.1016/j.carres.2005.09.007	2005	*
Phylogeny	The complete structure of the core carbohydrate backbone from the LPS of marine halophilic bacterium Pseudoalteromonas carrageenovora type strain IAM 12662T.	Silipo A, Lanzetta R, Parrilli M, Sturiale L, Garozzo D, Nazarenko EL, Gorshkova RP, Ivanova EP, Molinaro A	Carbohydr Res	10.1016/j.carres.2005.03.012	2005	*
Phylogeny	Assignment of Alteromonas elyakovii KMM 162T and five strains isolated from spot-wounded fronds of Laminaria japonica to Pseudoalteromonas elyakovii comb. nov. and the extended description of the species.	Sawabe T, Tanaka R, Iqbal MM, Tajima K, Ezura Y, Ivanova EP, Christen R	Int J Syst Evol Microbiol	10.1099/00207713-50-1-265	2000	*
Enzymology	The gene encoding the kappa-carrageenase of Alteromonas carrageenovora is related to beta-1,3-1,4-glucanases.	Barbeyron T, Henrissat B, Kloareg B	Gene	10.1016/0378-1119(94)90531-2	1994	*

References

#2839

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6820

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#42022 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#81894

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID264316.1 )

#81895

#117195 Collection of Institut Pasteur ; Curators of the CIP; CIP 103674
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Pseudoalteromonas carrageenovora in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Pseudoalteromonas carrageenovora IAM 12662 strain ATCC 43555 strain ATCC43555T

Pseudoalteromonas carrageenovora IAM 12662 strain ATCC 43555 strain ATCC43555T

Change proposal

Change proposal