Alteromonas nigrifaciens (CCUG 2085, NCTC 10691, ATCC 23327)

Name: Alteromonas nigrifaciens (CCUG 2085, NCTC 10691, ATCC 23327)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 12685

Type strain

Strain Designation DB 574

Culture col. no. CCUG 2085 NCTC 10691 ATCC 23327 DSM 8810 ATCC 19375 12 more

NCBI tax ID(s) 28109

Special Collections DSMZ CCUG JCM CIP

Links

Alteromonas nigrifaciens DB 574 is a mesophilic prokaryote that was isolated from butter.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 871

LMG 2227,ATCC 19375,ATCC 23327,CCUG 16154,IAM 13010,NCDO 755,NCIB 8614,NCTC 10691,DSM 6063,DSM 8810,CCUG 2085,CIP 104111,NCIMB 8614,JCM 20792,NBRC 103036

@ref 20215

Last LPSN update 2025-12-16 09:49:54

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Alteromonadaceae

Genus Alteromonas

Species Alteromonas nigrifaciens

Full scientific name Alteromonas nigrifaciens (ex White 1940) Baumann et al. 1984

Synonyms (1)

Pseudoalteromonas nigrifaciens

BacDive ID	Other strains from **Alteromonas nigrifaciens** (1)	Type strain
23202	A. nigrifaciens DSM 9416, IMG 2228, ATCC 25013, JCM 20849, ...

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	96.8
125438	negative	100

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
3411	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
3411	NUTRIENT AGAR WITH NaCl (DSMZ Medium 101)	Medium recipe at MediaDive	Name: NUTRIENT AGAR or BROTH WITH NaCl (DSMZ Medium 101) Composition: NaCl 30.0 g/l Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
42027	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
121298	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
3411	positive	growth	26	mesophilic
42027	positive	growth	22	psychrophilic
67770	positive	growth	25	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		96.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Dairy product

Isolation

@ref	Sample type
3411	butter
44480	Salted butter showing black discolouration
67770	Moderately salted butter
121298	Salted butter showing black discoloration

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3411	1	Risk group (German classification) According to TRBA 466
121298	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM222150v1 assembly for Pseudoalteromonas nigrifaciens KMM 661	complete	GCA_002221505	28109.4	2791355162	28109	98.79
66792	56931_A02 assembly for Pseudoalteromonas nigrifaciens NCTC10691	contig	GCA_900455185	28109.10	2808606633	28109	78.74
66792	ASM799125v1 assembly for Pseudoalteromonas nigrifaciens NBRC 103036	contig	GCA_007991255	28109.12		28109	54.69

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Pseudoalteromonas nigrifaciens gene for 16S rRNA, partial sequence	D11173	217	28109
20218	Alteromonas nigrifaciens 16S rRNA	D11222	206	28109
20218	Alteromonas nigrifaciens 16S rRNA	D11271	196	28109
20218	Pseudoalteromonas nigrifaciens gene for 16S rRNA, partial sequence, strain: NBRC 103036	AB681916	1461	28109
20218	A.nigrifaciens 16S rRNA gene (NCIMB 8614T)	X82146	1436	28109
124043	Pseudoalteromonas nigrifaciens strain KMM 661 16S ribosomal RNA gene, partial sequence.	MW198126	601	28109

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudoalteromonas nigrifaciens KMM 661
NCBI: GCA_002221505

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.50	no
125439	motility	BacteriaNetⓘ	no	57.70	no
125439	gram_stain	BacteriaNetⓘ	negative	96.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	89.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudoalteromonas nigrifaciens KMM 661
NCBI: GCA_002221505.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	96.34	no
125438	aerobic	aerobicⓘ	yes	73.95	no
125438	spore-forming	spore-formingⓘ	no	89.14	no
125438	thermophilic	thermophileⓘ	no	98.00	no
125438	flagellated	motile2+ⓘ	yes	87.96	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Structure of the capsular polysaccharide from Alteromonas nigrifaciens IAM 13010T containing 2-acetamido-2,6-dideoxy-L-talose and 3-deoxy-D-manno-octulosonic acid.	Gorshkova RP, Nazarenko EL, Zubkov VA, Shashkov AS, Knirel YA, Paramonov NA, Meshkov SV, Ivanova EP	Carbohydr Res	10.1016/s0008-6215(96)00339-4	1997
Phylogeny	Pseudoalteromonas arctica sp. nov., an aerobic, psychrotolerant, marine bacterium isolated from Spitzbergen.	Al Khudary R, Stosser NI, Qoura F, Antranikian G	Int J Syst Evol Microbiol	10.1099/ijs.0.64963-0	2008

References

#3411	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 8810
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#42027	; Curators of the CIP;
#44480	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 2085
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#121298	Collection of Institut Pasteur ; Curators of the CIP; CIP 104111
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Alteromonas nigrifaciens (CCUG 2085, NCTC 10691, ATCC 23327)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002221505

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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