Name: Pseudoalteromonas tetraodonis GFC
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 12686

Type strain:

Species: Pseudoalteromonas tetraodonis

Strain Designation: GFC

Culture col. no.: DSM 9166, IAM 14160, NCIMB 13177, JCM 21038, ATCC 51193, CIP 104758, KMM 458, NBRC 103034, CIP 107120

Strain history: CIP <- 1996, NCIMB <- IAM <- U. Simidu: strain GFC

NCBI tax ID(s): 1315271 (strain), 43659 (species)

SI-ID 42852

ATCC 51193, IAM 14160, CIP 104758, DSM 9166, NCIMB 13177, CIP 107120, JCM 21038, NBRC 103034

Special Collections

Section

When using BacDive for research please cite our paper

Pseudoalteromonas tetraodonis GFC is an obligate aerobe, psychrophilic, Gram-negative animal pathogen that was isolated from skin slime of pufferfish .

Gram-negative
motile
rod-shaped
animal pathogen
obligate aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Pseudoalteromonadaceae*
	Genus	*Pseudoalteromonas*
	Species	**Pseudoalteromonas tetraodonis**
	Full Scientific Name (LPSN)	Pseudoalteromonas tetraodonis (Simidu et al. 1990) Ivanova et al. 2001

	Synonym	Alteromonas tetraodonis
	Synonym	Pseudoalteromonas haloplanktis subsp. tetraodonis

Information on morphological and physiological properties Morphology

[Ref.: #123491]	Gram stain	negative
[Ref.: #125439]	Gram stain	negative Confidence in %97.9
[Ref.: #125438]	Gram stain	negative Confidence in %100

[Ref.: #123491]	Cell shape	rod-shaped

[Ref.: #123491]	Motility	yes

[Ref.: #123491]	Pigment production	no
[Ref.: #123491]	Pigment name	Pyocyanin

Multimedia content

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Caption:

Micrograph of DSM 9166. Scale bar represents 2 um.

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Intellectual property rights:

Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Information on culture and growth conditions Culture and growth conditions

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Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #3499]

Culture medium composition

expand / minimize

[Ref.: #42032]

Culture medium

MEDIUM 192 - for Alteromonas rubra

[Ref.: #42032]

Culture medium growth

[Ref.: #42032]

Culture medium composition

expand / minimize

[Ref.: #123491]

Culture medium

CIP Medium 192

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

CIP Medium 13

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #3499]		growth	20 °C
[Ref.: #42032]		growth	22 °C
[Ref.: #67770]		growth	25 °C
[Ref.: #123491]		growth	10-30 °C
[Ref.: #123491]	negative	growth	5 °C
[Ref.: #123491]	negative	growth	37 °C
[Ref.: #123491]	negative	growth	41 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #123491]	Oxygen tolerance	obligate aerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %99

[Ref.: #123491]	Ability of spore formation	no
[Ref.: #125439]	Ability of spore formation	no Confidence in %97.5

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #123491]		NaCl		growth	2-10	%
[Ref.: #123491]		NaCl	no	growth	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #123491]	citrate ChEBI	-	carbon source
[Ref.: #123491]	esculin ChEBI	-	hydrolysis
[Ref.: #123491]	nitrate ChEBI	-	reduction
[Ref.: #123491]	nitrate ChEBI	-	respiration
[Ref.: #123491]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #123491]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #123491]		indole ChEBI	no
[Ref.: #67770]		tetrodotoxin ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #123491]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123491]	amylase	+
[Ref.: #123491]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123491]	caseinase	+	3.4.21.50
[Ref.: #123491]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #123491]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #123491]	gelatinase	+
[Ref.: #123491]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #123491]	lipase	+
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #123491]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123491]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123491]	oxidase	+
[Ref.: #123491]	protease	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #123491]	tryptophan deaminase	-
[Ref.: #123491]	tween esterase	-
[Ref.: #123491]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #123491]	804	not determinedn.d.	+	-	-	+	-	-	-	+	-	+	+	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	+	-	+	-	-	+	-	+	+	-	+	+	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123491]	8177	-	+	+	+	-	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3499]	Sample type/isolated from	skin slime of pufferfish (Fugu poecilonotus)
[Ref.: #3499]	Host species	Fugu poecilonotus

[Ref.: #67770]	Sample type/isolated from	Skin slime of pufferfish (Fugu poecilonotus)
[Ref.: #67770]	Host species	Fugu poecilonotus

[Ref.: #123491]	Sample type/isolated from	Animal, Pufferfish (Fugu poecilonotus), skin slime
[Ref.: #123491]	Geographic location (country and/or sea, region)	Sendai Bay
[Ref.: #123491]	Country	Japan
[Ref.: #123491]	Country ISO 3 Code	JPN
[Ref.: #123491]	Continent	Asia
[Ref.: #123491]	Isolation date	1985-07-01
* marker position based on {}

Isolation sources categories

#Host	#Fishes	-
#Host Body-Site	#Organ	#Skin, Nail, Hair
#Host Body Product	#Fluids	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X82139 (>99% sequence identity) for Pseudoalteromonas from Microbeatlas

Aquatic Samples	2792
Soil Samples	24
Animal Samples	384
Plant Samples	22
Total Samples	3222

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3499]	Pathogenicity (animal)	yes
[Ref.: #3499]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123491]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Pseudoalteromonas tetraodonis strain IAM 14160 16S ribosomal RNA gene, partial sequence	AF214730	1464	GenBank ENA	43659 tax ID	*
[Ref.: #20218]	A.tetraodonis 16S rRNA gene (IAM 14160T)	X82139	1428	GenBank ENA	43659 tax ID	*
[Ref.: #20218]	Pseudoalteromonas tetraodonis strain KMM 458 16S ribosomal RNA gene, partial sequence	AF214729	1491	GenBank ENA	43659 tax ID	*
[Ref.: #20218]	Pseudoalteromonas tetraodonis gene for 16S rRNA, partial sequence, strain: NBRC 103034	AB681914	1459	GenBank ENA	43659 tax ID	*
[Ref.: #124043]	Pseudoalteromonas tetraodonis GFC strain KMM 458 16S ribosomal RNA gene, partial sequence.	OP740546	1143	GenBank ENA	1315271 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudoalteromonas tetraodonis GFC	GCA_002310835	complete	GenBank ENA	43659 tax ID	*
[Ref.: #66792]	Pseudoalteromonas tetraodonis GFC NBRC 103034	GCA_007991235	contig	GenBank ENA	1315271 tax ID	*
[Ref.: #66792]	Pseudoalteromonas tetraodonis GFC strain NBRC 103034	1315271.8	wgs	PATRIC	1315271 tax ID	*
[Ref.: #66792]	Pseudoalteromonas tetraodonis strain GFC	43659.6	complete	PATRIC	43659 tax ID	*

[Ref.: #67770]

GC-content

41 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudoalteromonas tetraodonis GFC NCBI: GCA_002310835.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	100	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	95.909	yes
[Ref.: #125438]	aerobic	aerobicⓘ	yes	75.845	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	88.976	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	100	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	88.69	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudoalteromonas tetraodonis GFC NCBI: GCA_002310835
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	97.5
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	65.1
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	97.9
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	99

Availability in culture collections External links

[Ref.: #3499]

Culture collection no.

DSM 9166, IAM 14160, NCIMB 13177, JCM 21038, ATCC 51193, CIP 104758, KMM 458, NBRC 103034, CIP 107120

[Ref.: #81898]

SI-ID 42852

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Structure of a colitose-containing O-specific polysaccharide of the marine bacterium Pseudoalteromonas tetraodonis IAM 14160(T).	Muldoon J, Perepelov AV, Shashkov AS, Gorshkova RP, Nazarenko EL, Zubkov VA, Ivanova EP, Knirel YA, Savage AV	Carbohydr Res	10.1016/s0008-6215(01)00121-5	2001	*
Phylogeny	Retrieval of the species Alteromonas tetraodonis Simidu et al. 1990 as Pseudoalteromonas tetraodonis comb. nov. and emendation of description.	Ivanova EP, Romanenko LA, Matte MH, Matte GR, Lysenko AM, Simidu U, Kita-Tsukamoto K, Sawabe T, Vysotskii MV, Frolova GM, Mikhailov V, Christen R, Colwell RR	Int J Syst Evol Microbiol	10.1099/00207713-51-3-1071	2001	*

References

#3499

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9166

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#42032 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#81898

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42852.1 )

#123491 Collection of Institut Pasteur ; Curators of the CIP; CIP 104758

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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