Komagataeibacter swingsii (DSM 16373, BCC 36451, JCM 17123)

Name: Komagataeibacter swingsii (DSM 16373, BCC 36451, JCM 17123)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 93

Type strain

Culture col. no. DSM 16373 BCC 36451 JCM 17123 LMG 22125 DST GL01 1 more

NCBI tax ID(s) 1307943 215220

Special Collections DSMZ JCM CIP

History DSMZ <- F. Dellaglio; DST GL01 CIP <- 2007, F. Dellaglio, Verona Univ., Verona, Italy, strain: DST GL01 JCM <-- DSM 16373 <-- F. Dellaglio DST GL01. CIP <- 2007, F. Dellaglio, Verona Univ., Verona, Italy, strain: DST GL01

Links

Komagataeibacter swingsii DSM 16373 is a facultative anaerobe, Gram-negative, rod-shaped bacterium that was isolated from organic apple juice.

Gram-negative rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 128066

LMG 22125,DSM 16373,CIP 109760,BCC 36451,JCM 17123

@ref 20215

Last LPSN update 2026-05-29 08:24:56

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Acetobacteraceae

Genus Komagataeibacter

Species Komagataeibacter swingsii

Full scientific name Komagataeibacter swingsii (Dellaglio et al. 2005) Yamada et al. 2013

Synonyms (2)

Gluconacetobacter swingsii
"Komagatabacter swingsii"

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
123397	negative	rod-shaped
125438	negative			97.333

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6410	GLUCONACETOBACTER RHAETICUS MEDIUM (DSMZ Medium 1044)	Medium recipe at MediaDive	Name: GLUCONACETOBACTER RHAETICUS MEDIUM (DSMZ Medium 1044) Composition: Glucose 50.0 g/l Agar 15.0 g/l Yeast extract 5.0 g/l Distilled water
39825	MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii		Distilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (5.000 g);Peptone (3.000 g);Mannitol (25.000 g)
123397	CIP Medium 1	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
6410	positive	growth	28
39825	positive	growth	30
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

123397

Oxygen tolerancefacultative anaerobe

Spore formation

@ref	Spore formation	Confidence
125439		97.407

Observation

67770

Observationquinones: Q-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
123397	17632 ChEBI	nitrate	+	reduction
123397	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
123397	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
123397	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
123397	oxidase	-
68382	trypsin	+	3.4.21.4	from API zym
123397	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
123397	-	+	+	+	-	+	-	-	+	-	+	+	-	-	-	-	+	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Beverage
#Host Body Product	#Plant	#Juice (natural)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
6410	organic apple juice	South Tyrol Region, Val Venosta	Italy	ITA	Europe
67770	Apple juice in South Tyrol region		Italy	ITA	Europe
123397	Food, Organic apple juice	Val Venosta, south Tyrol	Italy	ITA	Europe	2003

Taxonmaps

69479

Global distribution of 16S sequence JF794011 (>99% sequence identity) for Komagataeibacter from Microbeatlas

Aquatic Samples	523
Soil Samples	662
Animal Samples	2327
Plant Samples	555
Total Samples	4067

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6410	1	Risk group (German classification) According to TRBA 466
123397	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM320789v1 assembly for Komagataeibacter swingsii LMG 22125	contig	GCA_003207895	215220.5	2846440919	215220	57.07
124043	ASM2599459v1 assembly for Komagataeibacter swingsii DSM 16373	contig	GCA_025994595	1307943.3	8116959377	1307943	19.01

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Gluconacetobacter swingsii gene for 16S rRNA, partial sequence, strain: JCM 17123	AB645736	1411	215220
20218	Gluconacetobacter swingsii strain DSM 16373 16S ribosomal RNA gene, partial sequence	JF794011	1353	215220
6410	Gluconacetobacter swingsii strain DST GL01 16S ribosomal RNA gene, partial sequence	AY180960	1446	215220

GC content

@ref	GC-content (mol%)	Method
6410	61.7
67770	61.7	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM320789v1 assembly for Komagataeibacter swingsii LMG 22125
NCBI: GCA_003207895

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	73.25	no
125439	gram_stain	BacteriaNetⓘ	negative	88.94	no
125439	motility	BacteriaNetⓘ	yes	61.01	no
125439	spore_formation	BacteriaNetⓘ	no	97.41	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Komagataeibacter swingsii strain LMG 22125
PATRIC: 215220.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.33	no
125438	anaerobic	anaerobicⓘ	no	92.15	yes
125438	spore-forming	spore-formingⓘ	no	88.58	no
125438	thermophilic	thermophileⓘ	no	97.13	no
125438	aerobic	aerobicⓘ	yes	72.24	yes
125438	flagellated	motile2+ⓘ	no	59.71	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Safety evaluation of the food enzyme triacylglycerol lipase from the genetically modified Komagataella phaffii strain DSM 34125.	EFSA Panel on Food Enzymes (FEZ), Zorn H, Barat Baviera JM, Bolognesi C, Catania F, Gadermaier G, Greiner R, Mayo B, Mortensen A, Roos YH, Solano MLM, Van Loveren H, Vernis L, Aguilera J, Andryszkiewicz M, Cavanna D, Liu Y.	EFSA J	10.2903/j.efsa.2025.9546	2025
Metabolism	Possibilities for the Biological Control of Mycotoxins in Food and Feed.	Nesic K, Habschied K, Mastanjevic K, Mastanjevic K.	Toxins (Basel)	10.3390/toxins13030198	2021
	Comparison of five bacterial strains producing siderophores with ability to chelate iron under alkaline conditions.	Ferreira CMH, Vilas-Boas A, Sousa CA, Soares HMVM, Soares EV.	AMB Express	10.1186/s13568-019-0796-3	2019
Pathogenicity	Safety and efficacy of fumonisin esterase from Komagataella phaffii DSM 32159 as a feed additive for all animal species.	EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Bampidis V, Azimonti G, Bastos ML, Christensen H, Dusemund B, Kos Durjava M, Kouba M, Lopez-Alonso M, Lopez Puente S, Marcon F, Mayo B, Pechova A, Petkova M, Ramos F, Sanz Y, Villa RE, Woutersen R, Brozzi R, Galobart J, Gregoretti L, Innocenti ML, Sofianidis K, Vettori MV, Lopez-Galvez G.	EFSA J	10.2903/j.efsa.2020.6207	2020
Pathogenicity	Safety and efficacy of fumonisin esterase from Komagataella phaffii DSM 32159 as a technological feed additive for pigs and poultry.	EFSA Panel on Additives and Products or Substances used in Animal Feed (EFSA FEEDAP Panel), Rychen G, Aquilina G, Azimonti G, Bampidis V, Bastos ML, Bories G, Chesson A, Cocconcelli PS, Flachowsky G, Gropp J, Kolar B, Kouba M, Lopez-Alonso M, Lopez Puente S, Mayo B, Ramos F, Saarela M, Villa RE, Wallace RJ, Wester P, Martelli G, Renshaw D, Glandorf B, Herman L, Karenlampi S, Aguilera J, Lopez-Galvez G, Mantovani A.	EFSA J	10.2903/j.efsa.2018.5269	2018
Transcriptome	RNA-Seq transcriptomic analysis reveals gene expression profiles of acetic acid bacteria under high-acidity submerged industrial fermentation process.	Yang H, He Y, Liao J, Li X, Zhang J, Liebl W, Chen F.	Front Microbiol	10.3389/fmicb.2022.956729	2022
Phylogeny	16S rRNA in situ Hybridization Followed by Flow Cytometry for Rapid Identification of Acetic Acid Bacteria Involved in Submerged Industrial Vinegar Production.	Trcek J, Lipoglavsek L, Avgustin G.	Food Technol Biotechnol	10.17113/ftb.54.01.16.4041	2016
Genetics	Customized 16S-23S rDNA ITS Amplicon Metagenomics for Acetic Acid Bacteria Species Identification in Vinegars and Kombuchas.	Ribic A, Trcek J.	Microorganisms	10.3390/microorganisms12051023	2024
	Multilayered bacterial cellulose/reduced graphene oxide composite films for self-standing and binder-free electrode application.	Kiangkitiwan N, Wasanapiarnpong T, Srikulkit K.	Heliyon	10.1016/j.heliyon.2022.e10327	2022
Biotechnology	Set-Up of Bacterial Cellulose Production From the Genus Komagataeibacter and Its Use in a Gluten-Free Bakery Product as a Case Study.	Vigentini I, Fabrizio V, Dellaca F, Rossi S, Azario I, Mondin C, Benaglia M, Foschino R	Front Microbiol	10.3389/fmicb.2019.01953	2019
Genetics	Isolation and characterization of phosphate-solubilizing bacterium Pantoea rhizosphaerae sp. nov. from Acer truncatum rhizosphere soil and its effect on Acer truncatum growth.	Ma Q, He S, Wang X, Rengel Z, Chen L, Wang X, Pei S, Xin X, Zhang X.	Front Plant Sci	10.3389/fpls.2023.1218445	2023
	Description of Komagataeibacter melaceti sp. nov. and Komagataeibacter melomenusus sp. nov. Isolated from Apple Cider Vinegar.	Maric L, Cleenwerck I, Accetto T, Vandamme P, Trcek J.	Microorganisms	10.3390/microorganisms8081178	2020
Phylogeny	Gluconacetobacter kakiaceti sp. nov., an acetic acid bacterium isolated from a traditional Japanese fruit vinegar.	Iino T, Suzuki R, Tanaka N, Kosako Y, Ohkuma M, Komagata K, Uchimura T	Int J Syst Evol Microbiol	10.1099/ijs.0.031773-0	2011
Phylogeny	Description of Gluconacetobacter swingsii sp. nov. and Gluconacetobacter rhaeticus sp. nov., isolated from Italian apple fruit.	Dellaglio F, Cleenwerck I, Felis GE, Engelbeen K, Janssens D, Marzotto M	Int J Syst Evol Microbiol	10.1099/ijs.0.63301-0	2005

References

#6410	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16373
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#39825	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#123397	Collection of Institut Pasteur ; Curators of the CIP; CIP 109760
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Komagataeibacter swingsii (DSM 16373, BCC 36451, JCM 17123)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003207895

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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