Name: Komagataeibacter swingsii DSM 16373
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 93

Type strain:

Species: Komagataeibacter swingsii

Culture col. no.: DSM 16373, BCC 36451, JCM 17123, LMG 22125, DST GL01, CIP 109760

Strain history: CIP <- 2007, F. Dellaglio, Verona Univ., Verona, Italy, strain: DST GL01

NCBI tax ID(s): 1307943 (strain), 215220 (species)

SI-ID 128066

LMG 22125, DSM 16373, CIP 109760, BCC 36451, JCM 17123

Special Collections

Section

Komagataeibacter swingsii DSM 16373 is a facultative anaerobe, Gram-negative bacterium that was isolated from organic apple juice.

Gram-negative
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Komagataeibacter*
	Species	**Komagataeibacter swingsii**
	Full Scientific Name (LPSN)	Komagataeibacter swingsii (Dellaglio et al. 2005) Yamada et al. 2013

	Synonym	"Komagatabacter* swingsii"*
	Synonym	Gluconacetobacter swingsii

Information on morphological and physiological properties Morphology

[Ref.: #123397]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %97.333

[Ref.: #123397]	Cell shape	rod-shaped

[Ref.: #123397]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6410]

Culture medium

GLUCONACETOBACTER RHAETICUS MEDIUM (DSMZ Medium 1044)

[Ref.: #6410]

Culture medium growth

[Ref.: #6410]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6410]

Culture medium composition

expand / minimize

[Ref.: #39825]

Culture medium

MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii

[Ref.: #39825]

Culture medium growth

[Ref.: #39825]

Culture medium composition

expand / minimize

[Ref.: #123397]

Culture medium

CIP Medium 1

[Ref.: #123397]

Culture medium growth

[Ref.: #123397]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #6410]	growth	28 °C
[Ref.: #39825]	growth	30 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #123397]

Oxygen tolerance

facultative anaerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #123397]		nitrate ChEBI	+	reduction
[Ref.: #123397]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #123397]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123397]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123397]	oxidase	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #123397]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123397]	12093	-	+	+	+	-	+	-	-	+	-	+	+	-	-	-	-	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6410]	Sample type/isolated from	organic apple juice
[Ref.: #6410]	Geographic location (country and/or sea, region)	South Tyrol Region, Val Venosta
[Ref.: #6410]	Country	Italy
[Ref.: #6410]	Country ISO 3 Code	ITA
[Ref.: #6410]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Apple juice in South Tyrol region
[Ref.: #67770]	Country	Italy
[Ref.: #67770]	Country ISO 3 Code	ITA
[Ref.: #67770]	Continent	Europe

[Ref.: #123397]	Sample type/isolated from	Food, Organic apple juice
[Ref.: #123397]	Geographic location (country and/or sea, region)	Val Venosta, south Tyrol
[Ref.: #123397]	Country	Italy
[Ref.: #123397]	Country ISO 3 Code	ITA
[Ref.: #123397]	Continent	Europe
[Ref.: #123397]	Isolation date	2003
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Beverage
#Host Body Product	#Plant	#Juice (natural)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JF794011 (>99% sequence identity) for Komagataeibacter from Microbeatlas

Aquatic Samples	523
Soil Samples	662
Animal Samples	2327
Plant Samples	555
Total Samples	4067

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6410]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123397]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6410]	Gluconacetobacter swingsii strain DST GL01 16S ribosomal RNA gene, partial sequence	AY180960	1446	GenBank ENA	215220 tax ID
[Ref.: #20218]	Gluconacetobacter swingsii strain DSM 16373 16S ribosomal RNA gene, partial sequence	JF794011	1353	GenBank ENA	215220 tax ID	*
[Ref.: #20218]	Gluconacetobacter swingsii gene for 16S rRNA, partial sequence, strain: JCM 17123	AB645736	1411	GenBank ENA	215220 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Komagataeibacter swingsii LMG 22125	GCA_003207895	contig	GenBank ENA	215220 tax ID
[Ref.: #66792]	Komagataeibacter swingsii strain LMG 22125	215220.5	wgs	PATRIC	215220 tax ID	*
[Ref.: #66792]	Komagataeibacter swingsii LMG 22125	2846440919	draft	JGI IMG/M	215220 tax ID	*

[Ref.: #6410]	GC-content	61.7 mol%
[Ref.: #67770]	GC-content	61.7 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Komagataeibacter swingsii strain LMG 22125 PATRIC: 215220.8
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Komagataeibacter swingsii strain LMG 22125 PATRIC: 215220.5
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.333	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	92.149	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.577	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.128	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	72.242	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	59.713	no

Availability in culture collections External links

[Ref.: #6410]

Culture collection no.

DSM 16373, BCC 36451, JCM 17123, LMG 22125, DST GL01, CIP 109760

[Ref.: #69776]

SI-ID 128066

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Gluconacetobacter kakiaceti sp. nov., an acetic acid bacterium isolated from a traditional Japanese fruit vinegar.	Iino T, Suzuki R, Tanaka N, Kosako Y, Ohkuma M, Komagata K, Uchimura T	Int J Syst Evol Microbiol	10.1099/ijs.0.031773-0	2011	*
Phylogeny	Description of Gluconacetobacter swingsii sp. nov. and Gluconacetobacter rhaeticus sp. nov., isolated from Italian apple fruit.	Dellaglio F, Cleenwerck I, Felis GE, Engelbeen K, Janssens D, Marzotto M	Int J Syst Evol Microbiol	10.1099/ijs.0.63301-0	2005	*
Biotechnology	Set-Up of Bacterial Cellulose Production From the Genus Komagataeibacter and Its Use in a Gluten-Free Bakery Product as a Case Study.	Vigentini I, Fabrizio V, Dellaca F, Rossi S, Azario I, Mondin C, Benaglia M, Foschino R	Front Microbiol	10.3389/fmicb.2019.01953	2019	*

References

#6410

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16373

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39825 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69776

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID128066.1 )

#123397 Collection of Institut Pasteur ; Curators of the CIP; CIP 109760
* These data were automatically processed and therefore are not curated

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Komagataeibacter swingsii strain LMG 22125

Komagataeibacter swingsii strain LMG 22125

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