Mycobacterium llatzerense (DSM 45343, CCUG 54744, CECT 7273)

Name: Mycobacterium llatzerense (DSM 45343, CCUG 54744, CECT 7273)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8572

Type strain

Strain Designation MG13

Culture col. no. DSM 45343 CCUG 54744 CECT 7273 MG13 JCM 16229

NCBI tax ID(s) 280871

Special Collections DSMZ CCUG JCM Literature strains

History DSMZ <- CCUG; CCUG 54744 <- J. Lalucat, Palma de Mallorca JCM <-- CECT 7273 <-- J. Lalucat MG13.

Links

Mycobacterium llatzerense MG13 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from water, haemodialysis.

Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 360283

CCUG 54744,CECT 7273,JCM 16229,DSM 45343

@ref 20215

Last LPSN update 2026-05-29 08:26:53

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium llatzerense

Full scientific name Mycobacterium llatzerense Gomila et al. 2008

Synonyms (1)

Mycolicibacterium llatzerense

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
32657	positive	rod-shaped
125439	positive			92.931

Pigmentation

32657

Productionno

Multimedia

@ref:	16333
multimedia content:	DSM_45343.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45343.jpg
caption:	Medium 645 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16333	MIDDLEBROOK MEDIUM (DSMZ Medium 645)		Medium recipe at MediaDive	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16333	positive	growth	28
32657	positive	growth	22-30
32657	positive	optimum	22-30
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH
32657	positive	optimum	7
32657	positive	growth	7

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
32657	aerobe
125439	obligate aerobe	96.591

Observation

32657

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32657	4853 ChEBI	esculin	+	hydrolysis

Enzymes

@ref	Value	Activity	Ec
32657	alkaline phosphatase	+	3.1.3.1

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	ppGpp biosynthesis	100	4 of 4
66794	threonine metabolism	100	10 of 10
66794	cardiolipin biosynthesis	100	7 of 7
66794	IAA biosynthesis	100	3 of 3
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	ethylmalonyl-CoA pathway	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	cyanate degradation	100	3 of 3
66794	ethanol fermentation	100	2 of 2
66794	biotin biosynthesis	100	4 of 4
66794	starch degradation	100	10 of 10
66794	methylglyoxal degradation	100	5 of 5
66794	butanoate fermentation	100	4 of 4
66794	valine metabolism	100	9 of 9
66794	palmitate biosynthesis	100	22 of 22
66794	enterobactin biosynthesis	100	3 of 3
66794	phenylmercury acetate degradation	100	2 of 2
66794	aspartate and asparagine metabolism	100	9 of 9
66794	octane oxidation	100	3 of 3
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	aerobactin biosynthesis	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	taurine degradation	100	1 of 1
66794	vitamin K metabolism	100	5 of 5
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	cellulose degradation	100	5 of 5
66794	leucine metabolism	92.31	12 of 13
66794	phenylalanine metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	propionate fermentation	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	vitamin B12 metabolism	88.24	30 of 34
66794	gluconeogenesis	87.5	7 of 8
66794	flavin biosynthesis	86.67	13 of 15
66794	heme metabolism	85.71	12 of 14
66794	photosynthesis	85.71	12 of 14
66794	glutathione metabolism	85.71	12 of 14
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	propanol degradation	85.71	6 of 7
66794	urea cycle	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	purine metabolism	81.91	77 of 94
66794	metabolism of disaccharids	81.82	9 of 11
66794	factor 420 biosynthesis	80	4 of 5
66794	hydrogen production	80	4 of 5
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	alanine metabolism	79.31	23 of 29
66794	citric acid cycle	78.57	11 of 14
66794	4-hydroxymandelate degradation	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	serine metabolism	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	ketogluconate metabolism	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	toluene degradation	75	3 of 4
66794	degradation of aromatic, nitrogen containing compounds	75	9 of 12
66794	sulfopterin metabolism	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	acetate fermentation	75	3 of 4
66794	lipid metabolism	74.19	23 of 31
66794	pyrimidine metabolism	73.33	33 of 45
66794	peptidoglycan biosynthesis	73.33	11 of 15
66794	proline metabolism	72.73	8 of 11
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	tryptophan metabolism	71.05	27 of 38
66794	glycolysis	70.59	12 of 17
66794	4-hydroxyphenylacetate degradation	70	7 of 10
66794	sulfate reduction	69.23	9 of 13
66794	d-mannose degradation	66.67	6 of 9
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	lysine metabolism	66.67	28 of 42
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	arginine metabolism	66.67	16 of 24
66794	cysteine metabolism	66.67	12 of 18
66794	non-pathway related	65.79	25 of 38
66794	oxidative phosphorylation	64.84	59 of 91
66794	bile acid biosynthesis, neutral pathway	64.71	11 of 17
66794	tyrosine metabolism	64.29	9 of 14
66794	cholesterol biosynthesis	63.64	7 of 11
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	androgen and estrogen metabolism	62.5	10 of 16
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	methionine metabolism	61.54	16 of 26
66794	Entner Doudoroff pathway	60	6 of 10
66794	gallate degradation	60	3 of 5
66794	3-phenylpropionate degradation	60	9 of 15
66794	arachidonate biosynthesis	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	phenol degradation	60	12 of 20
66794	3-chlorocatechol degradation	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	degradation of sugar alcohols	56.25	9 of 16
66794	allantoin degradation	55.56	5 of 9
66794	histidine metabolism	55.17	16 of 29
66794	d-xylose degradation	54.55	6 of 11
66794	ribulose monophosphate pathway	50	1 of 2
66794	suberin monomers biosynthesis	50	1 of 2
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	cyclohexanol degradation	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	quinate degradation	50	1 of 2
66794	CMP-KDO biosynthesis	50	2 of 4
66794	pantothenate biosynthesis	50	3 of 6
66794	polyamine pathway	47.83	11 of 23
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	vitamin B6 metabolism	45.45	5 of 11
66794	ascorbate metabolism	45.45	10 of 22
66794	lipid A biosynthesis	44.44	4 of 9
66794	chlorophyll metabolism	44.44	8 of 18
66794	nitrate assimilation	44.44	4 of 9
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	carotenoid biosynthesis	40.91	9 of 22
66794	glycine betaine biosynthesis	40	2 of 5
66794	D-cycloserine biosynthesis	40	2 of 5
66794	degradation of hexoses	38.89	7 of 18
66794	carnitine metabolism	37.5	3 of 8
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	methane metabolism	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	coenzyme M biosynthesis	30	3 of 10
66794	degradation of pentoses	28.57	8 of 28
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	vitamin E metabolism	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	daunorubicin biosynthesis	22.22	2 of 9
66794	arachidonic acid metabolism	22.22	4 of 18

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	#Aquatic
#Infection	#Medical device

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
16333	water, haemodialysis		Mallorca, Hospital Son Llàtzer	Spain	ESP	Europe
60302	Water,hemodialysis	2003-03-01	Mallorca,Hospital Son Llàtzer	Spain	ESP	Europe
67770	Pure water distribution system of a haemodialysis unit in the Hospital Son Llàtzer		Mallorca	Spain	ESP	Europe

Taxonmaps

69479

Global distribution of 16S sequence AJ746070 (>99% sequence identity) for Mycolicibacterium from Microbeatlas

Aquatic Samples	1444
Soil Samples	558
Animal Samples	301
Plant Samples	256
Total Samples	2559

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16333	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3953199v1 assembly for Mycolicibacterium llatzerense JCM 16229	scaffold	GCA_039531995	280871	54.56
124043	ASM4265830v1 assembly for Mycolicibacterium llatzerense CCUG 54744	scaffold	GCA_042658305	280871	51.4

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16333	Mycobacterium llatzerense partial 16S rRNA gene, type strain MG13T	AJ746070	1397		280871

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3953199v1 assembly for Mycolicibacterium llatzerense JCM 16229
NCBI: GCA_039531995

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.59	no
125439	gram_stain	BacteriaNetⓘ	positive	92.93	no
125439	motility	BacteriaNetⓘ	no	86.34	no
125439	spore_formation	BacteriaNetⓘ	no	78.24	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera.	Gupta RS, Lo B, Son J.	Front Microbiol	10.3389/fmicb.2018.00067	2018
Phylogeny	Microbiological features and clinical relevance of new species of the genus Mycobacterium.	Tortoli E.	Clin Microbiol Rev	10.1128/cmr.00035-14	2014
Phylogeny	Mycobacterium llatzerense sp. nov., a facultatively autotrophic, hydrogen-oxidizing bacterium isolated from haemodialysis water.	Gomila M, Ramirez A, Gasco J, Lalucat J	Int J Syst Evol Microbiol	10.1099/ijs.0.65857-0	2008

References

#16333	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45343
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28868	IJSEM 2769 2008 ( DOI 10.1099/ijs.0.65857-0 , PubMed 19060055 )
#32657	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28868
#60302	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54744
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mycobacterium llatzerense (DSM 45343, CCUG 54744, CECT 7273)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Observation

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039531995

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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