Strain identifier

BacDive ID: 8572

Type strain: Yes

Species: Mycobacterium llatzerense

Strain Designation: MG13

Strain history: CECT 7273 <-- J. Lalucat MG13.

NCBI tax ID(s): 280871 (species)

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General

@ref: 16333

BacDive-ID: 8572

DSM-Number: 45343

keywords: 16S sequence, Bacteria, aerobe, Gram-positive, rod-shaped

description: Mycobacterium llatzerense MG13 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from water, haemodialysis.

NCBI tax id

  • NCBI tax id: 280871
  • Matching level: species

strain history

@refhistory
16333<- CCUG; CCUG 54744 <- J. Lalucat, Palma de Mallorca
67770CECT 7273 <-- J. Lalucat MG13.

doi: 10.13145/bacdive8572.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium llatzerense
  • full scientific name: Mycobacterium llatzerense Gomila et al. 2008

  • synonyms

    • @ref: 20215
    • synonym: Mycolicibacterium llatzerense

@ref: 16333

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium llatzerense

full scientific name: Mycobacterium llatzerense Gomila et al. 2008

strain designation: MG13

type strain: yes

Morphology

cell morphology

  • @ref: 32657
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 32657
  • production: no

multimedia

  • @ref: 16333
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45343.jpg
  • caption: Medium 645 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 16333
  • name: MIDDLEBROOK MEDIUM (DSMZ Medium 645)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/645
  • composition: Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water

culture temp

@refgrowthtypetemperature
16333positivegrowth28
32657positivegrowth22-30
32657positiveoptimum22-30
67770positivegrowth28

culture pH

@refabilitytypepH
32657positivegrowth7
32657positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 32657
  • oxygen tolerance: aerobe

observation

  • @ref: 32657
  • observation: aggregates in chains

metabolite utilization

  • @ref: 32657
  • Chebi-ID: 4853
  • metabolite: esculin
  • utilization activity: +
  • kind of utilization tested: hydrolysis

enzymes

  • @ref: 32657
  • value: alkaline phosphatase
  • activity: +
  • ec: 3.1.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
16333water, haemodialysisMallorca, Hospital Son LlàtzerSpainESPEurope
60302Water,hemodialysisMallorca,Hospital Son LlàtzerSpainESPEurope2003-03-01
67770Pure water distribution system of a haemodialysis unit in the Hospital Son LlàtzerMallorcaSpainESPEurope

isolation source categories

Cat1Cat2
#Environmental#Aquatic
#Infection#Medical device

taxonmaps

  • @ref: 69479
  • File name: preview.99_881.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_115;97_219;98_696;99_881&stattab=map
  • Last taxonomy: Mycolicibacterium
  • 16S sequence: AJ746070
  • Sequence Identity:
  • Total samples: 2559
  • soil counts: 558
  • aquatic counts: 1444
  • animal counts: 301
  • plant counts: 256

Safety information

risk assessment

  • @ref: 16333
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16333
  • description: Mycobacterium llatzerense partial 16S rRNA gene, type strain MG13T
  • accession: AJ746070
  • length: 1397
  • database: nuccore
  • NCBI tax ID: 280871

External links

@ref: 16333

culture collection no.: DSM 45343, CCUG 54744, CECT 7273, JCM 16229

straininfo link

  • @ref: 77956
  • straininfo: 360283

literature

  • topic: Phylogeny
  • Pubmed-ID: 19060055
  • title: Mycobacterium llatzerense sp. nov., a facultatively autotrophic, hydrogen-oxidizing bacterium isolated from haemodialysis water.
  • authors: Gomila M, Ramirez A, Gasco J, Lalucat J
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.65857-0
  • year: 2008
  • mesh: Anti-Bacterial Agents/pharmacology, Autotrophic Processes/*physiology, *Dialysis Solutions, Hydrogen/*metabolism, Microbial Sensitivity Tests, Molecular Sequence Data, Mycobacterium/*classification/drug effects/genetics/*physiology, Oxidation-Reduction, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, *Renal Dialysis, Species Specificity, *Water Microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
16333Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45343)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45343
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32657Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2886828776041
60302Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 54744)https://www.ccug.se/strain?id=54744
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
77956Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID360283.1StrainInfo: A central database for resolving microbial strain identifiers