Name: Mycobacterium paraseoulense 31118
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 8538

Type strain:

Species: Mycobacterium paraseoulense

Strain Designation: 31118

Culture col. no.: DSM 45000, KCTC 19145, JCM 16952

Strain history: <- BJ Kim, Seoul Natl. Univ.

NCBI tax ID(s): 590652 (species)

SI-ID 297478

DSM 45000, KCTC 19145, JCM 16952

Special Collections

Section

Mycobacterium paraseoulense 31118 is an aerobe, rod-shaped human pathogen that was isolated from sputum of a patient with general pulmonary symptoms.

rod-shaped
aerobe
human pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium paraseoulense**
	Full Scientific Name (LPSN)	Mycobacterium paraseoulense Lee et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive

[Ref.: #29387]	Cell shape	rod-shaped

[Ref.: #29387]	Motility	no

[Ref.: #29387]

Pigment production

yes

Multimedia content

[Ref.: #12232]

Caption:

Medium 645 37°C

[Ref.: #12232]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12232]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

[Ref.: #12232]

Culture medium growth

[Ref.: #12232]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12232]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #12232]	growth	37 °C
[Ref.: #29387]	growth	25-40 °C
[Ref.: #29387]	optimum	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #67771]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #29387]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29387]		NaCl		growth	0-5	%

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29387]		urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12232]	Sample type/isolated from	sputum of a patient with general pulmonary symptoms
[Ref.: #12232]	Geographic location (country and/or sea, region)	Seoul
[Ref.: #12232]	Country	Republic of Korea
[Ref.: #12232]	Country ISO 3 Code	KOR
[Ref.: #12232]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Human sputum
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From sputum
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Infection	#Inflammation	-
#Infection	#Patient	-
#Host Body-Site	#Oral cavity and airways	#Airways
#Host Body Product	#Fluids	#Sputum

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ536404 (>99% sequence identity) for Mycobacterium from Microbeatlas

Aquatic Samples	382
Soil Samples	881
Animal Samples	203
Plant Samples	54
Total Samples	1520

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12232]	Pathogenicity (human)	yes, in single cases
[Ref.: #12232]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12232]	Mycobacterium paraseoulense strain 31118 16S ribosomal RNA gene, partial sequence	DQ536404	1522	GenBank ENA	590652 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Mycobacterium paraseoulense DSM 45000	GCA_002086475	contig	GenBank ENA	590652 tax ID
[Ref.: #66792]	Mycobacterium paraseoulense JCM 16952	GCA_010731655	complete	GenBank ENA	590652 tax ID	*
[Ref.: #66792]	Mycobacterium paraseoulense strain DSM 45000	590652.3	wgs	PATRIC	590652 tax ID	*
[Ref.: #66792]	Mycobacterium paraseoulense strain JCM 16952	590652.11	complete	PATRIC	590652 tax ID	*
[Ref.: #66792]	Mycobacterium paraseoulense DSM 45000	2865579360	draft	JGI IMG/M	590652 tax ID	*
[Ref.: #66792]	Mycobacterium paraseoulense DSM 45000	GCA_025823155	scaffold	GenBank ENA	590652 tax ID	*

[Ref.: #67770]

GC-content

67.9 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mycobacterium paraseoulense JCM 16952 NCBI: GCA_010731655.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycobacterium paraseoulense JCM 16952 NCBI: GCA_010731655.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.062	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	91.609	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	76.531	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	60.895	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.8	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	86	yes

Availability in culture collections External links

[Ref.: #12232]

Culture collection no.

DSM 45000, KCTC 19145, JCM 16952

[Ref.: #77924]

SI-ID 297478

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mycobacterium paraseoulense sp. nov., a slowly growing, scotochromogenic species related genetically to Mycobacterium seoulense.	Lee HK, Lee SA, Lee IK, Yu HK, Park YG, Hyun JW, Kim K, Kook YH, Kim BJ	Int J Syst Evol Microbiol	10.1099/ijs.0.012054-0	2009	*

References

#12232

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45000

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29387

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25794 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77924

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297478.1 )

#25794

IJSEM 439 2010 ( DOI 10.1099/ijs.0.012054-0 , PubMed 19654367 )

* These data were automatically processed and therefore are not curated

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Mycobacterium paraseoulense JCM 16952

Mycobacterium paraseoulense JCM 16952

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