Mycobacterium paraseoulense (DSM 45000, KCTC 19145, 31118)

Name: Mycobacterium paraseoulense (DSM 45000, KCTC 19145, 31118)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 8538

Type strain

Strain Designation 31118

Culture col. no. DSM 45000 KCTC 19145 31118 JCM 16952

NCBI tax ID(s) 590652

Special Collections DSMZ JCM KCTC Literature strains

History DSMZ <- H.-S. Mun; strain 31118 JCM <-- KCTC 19145 <-- B.-J. Kim 31118. KCTC <- BJ Kim, Seoul Natl. Univ.

Links

Mycobacterium paraseoulense 31118 is an aerobe, rod-shaped bacterium that was isolated from sputum of a patient with general pulmonary symptoms.

rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 297478

DSM 45000,KCTC 19145,JCM 16952

@ref 20215

Last LPSN update 2026-05-29 08:26:53

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium paraseoulense

Full scientific name Mycobacterium paraseoulense Lee et al. 2010

Morphology

Cell morphology

@ref	Cell shape	Motility	Gram stain
29387	rod-shaped
67771			positive

Pigmentation

29387

Productionyes

Multimedia

@ref:	12232
multimedia content:	DSM_45000.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45000.jpg
caption:	Medium 645 37°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
12232	MIDDLEBROOK MEDIUM (DSMZ Medium 645)		Medium recipe at MediaDive	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
12232	positive	growth	37
29387	positive	growth	25-40
29387	positive	optimum	37
67770	positive	growth	37
67771	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67771	aerobe
125439	obligate aerobe	99.034

Spore formation

29387

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29387	NaCl	positive	growth	0-5 %

Enzymes

@ref	Value	Activity	Ec
29387	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Inflammation	-
#Infection	#Patient	-
#Host Body-Site	#Oral cavity and airways	#Airways
#Host Body Product	#Fluids	#Sputum

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
12232	sputum of a patient with general pulmonary symptoms	Homo sapiens	Seoul	Republic of Korea	KOR	Asia
67770	Human sputum	Homo sapiens		Republic of Korea	KOR	Asia
67771	From sputum			Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence DQ536404 (>99% sequence identity) for Mycobacterium from Microbeatlas

Aquatic Samples	382
Soil Samples	881
Animal Samples	203
Plant Samples	54
Total Samples	1520

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
12232	yes, in single cases	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1073165v1 assembly for Mycobacterium paraseoulense JCM 16952	complete	GCA_010731655	590652.11	8110656815	590652	97.87
66792	ASM2582315v1 assembly for Mycobacterium paraseoulense DSM 45000	scaffold	GCA_025823155	590652.13	8115970108	590652	71.12
67770	ASM208647v1 assembly for Mycobacterium paraseoulense DSM 45000	contig	GCA_002086475	590652.3	2865579360	590652	24.39

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
12232	Mycobacterium paraseoulense strain 31118 16S ribosomal RNA gene, partial sequence	DQ536404	1522		590652

GC content

@ref	GC-content (mol%)	Method
67770	67.9	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1073165v1 assembly for Mycobacterium paraseoulense JCM 16952
BV-BRC: 590652.11

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.03	no
125439	gram_stain	BacteriaNetⓘ	positive	68.08	no
125439	motility	BacteriaNetⓘ	no	75.63	no
125439	spore_formation	BacteriaNetⓘ	no	85.65	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycobacterium paraseoulense JCM 16952
NCBI: GCA_010731655.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.06	yes
125438	anaerobic	anaerobicⓘ	no	91.61	no
125438	aerobic	aerobicⓘ	yes	76.53	yes
125438	spore-forming	spore-formingⓘ	no	60.90	yes
125438	thermophilic	thermophileⓘ	no	92.80	no
125438	flagellated	motile2+ⓘ	no	86.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbiological features and clinical relevance of new species of the genus Mycobacterium.	Tortoli E.	Clin Microbiol Rev	10.1128/cmr.00035-14	2014
	The Presence of esat-6 and cfp10 and Other Gene Orthologs of the RD 1 Region in Non-Tuberculous Mycobacteria, Mycolicibacteria, Mycobacteroides and Mycolicibacter as Possible Impediments for the Diagnosis of (Animal) Tuberculosis	Gcebe N, Hlokwe T, Bouw A, Michel A, Rutten V.	Microorganisms		2024
Phylogeny	Mycobacterium paraseoulense sp. nov., a slowly growing, scotochromogenic species related genetically to Mycobacterium seoulense.	Lee HK, Lee SA, Lee IK, Yu HK, Park YG, Hyun JW, Kim K, Kook YH, Kim BJ	Int J Syst Evol Microbiol	10.1099/ijs.0.012054-0	2009

References

#12232	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45000
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25794	IJSEM 439 2010 ( DOI 10.1099/ijs.0.012054-0 , PubMed 19654367 )
#29387	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25794
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mycobacterium paraseoulense (DSM 45000, KCTC 19145, 31118)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_010731655

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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