Name: Mycobacterium seoulense 03-19
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 8537

Type strain:

Species: Mycobacterium seoulense

Strain Designation: 03-19

Culture col. no.: DSM 44998, CIP 109583, KCTC 19146, JCM 16018

Strain history: CIP <- 2007, DSMZ <- H. S. Mun, Seoul Univ., Seoul, Korea: strain 03-19

NCBI tax ID(s): 386911 (species)

SI-ID 297263

DSM 44998, KCTC 19146, JCM 16018, CIP 109583

Section

Mycobacterium seoulense 03-19 is an aerobe, mesophilic, rod-shaped human pathogen that was isolated from sputum.

rod-shaped
aerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium seoulense**
	Full Scientific Name (LPSN)	Mycobacterium seoulense Mun et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #31977]	Cell shape	rod-shaped

[Ref.: #69480]	Motility	no Confidence in %92.025

[Ref.: #31977]

Pigment production

yes

Multimedia content

[Ref.: #12230]

Caption:

Medium 645 37°C

[Ref.: #12230]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12230]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

[Ref.: #12230]

Culture medium growth

[Ref.: #12230]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12230]

Culture medium composition

expand / minimize

[Ref.: #122562]

Culture medium

CIP Medium 55

[Ref.: #122562]

Culture medium growth

[Ref.: #122562]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #12230]	growth	37 °C
[Ref.: #31977]	growth	25-37 °C
[Ref.: #31977]	optimum	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #67771]	growth	37 °C

[Ref.: #12230]	Temperature range	mesophilic
[Ref.: #31977]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #31977]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.932

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31977]		nitrate ChEBI	+	reduction

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31977]		catalase	+	1.11.1.6
[Ref.: #31977]		pyrazinamidase	+	3.5.1.B15

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12230]	Sample type/isolated from	sputum
[Ref.: #12230]	Geographic location (country and/or sea, region)	Seoul
[Ref.: #12230]	Country	Republic of Korea
[Ref.: #12230]	Country ISO 3 Code	KOR
[Ref.: #12230]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Sputum of a 52-year-old female with symptomatic pulmonary infection
[Ref.: #67770]	Geographic location (country and/or sea, region)	Seoul
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From sputum
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #122562]	Sample type/isolated from	Human, Lung
[Ref.: #122562]	Geographic location (country and/or sea, region)	Seoul
[Ref.: #122562]	Country	Republic of Korea
[Ref.: #122562]	Country ISO 3 Code	KOR
[Ref.: #122562]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host Body Product

#Fluids

#Sputum

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ536403 (>99% sequence identity) for Mycobacterium from Microbeatlas

Aquatic Samples	382
Soil Samples	881
Animal Samples	203
Plant Samples	54
Total Samples	1520

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12230]	Pathogenicity (human)	yes, in single cases
[Ref.: #12230]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122562]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31977]	Mycobacterium seoulense strain 03-19 16S ribosomal RNA gene, partial sequence	DQ536403	1522	GenBank	386911 tax ID
[Ref.: #20218]	Mycobacterium seoulense strain 03-19 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	FJ042511	438	ENA	386911 tax ID	*
[Ref.: #20218]	Mycobacterium seoulense strain DSM 44998 16S ribosomal RNA gene, partial sequence	EU191909	468	ENA	386911 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycobacterium seoulense JCM 16018	GCA_010731595	complete	GenBank	386911 tax ID	*
[Ref.: #66792]	Mycobacterium seoulense strain JCM 16018	386911.11	complete	PATRIC	386911 tax ID	*
[Ref.: #66792]	Mycobacterium seoulense DSM 44998	GCA_025823355	scaffold	GenBank	386911 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mycobacterium seoulense JCM 16018 NCBI: GCA_010731595.1
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycobacterium seoulense JCM 16018 NCBI: GCA_010731595.1
[Ref.: #69480]	motile	no	92.96	no
[Ref.: #69480]	flagellated	no	98.683	no
[Ref.: #69480]	gram-positive	yes	87.797	yes
[Ref.: #69480]	anaerobic	no	98.667	yes
[Ref.: #69480]	aerobic	yes	87.614	yes
[Ref.: #69480]	halophile	no	93.093	no
[Ref.: #69480]	spore-forming	no	88.494	yes
[Ref.: #69480]	glucose-util	yes	64.732	no
[Ref.: #69480]	thermophile	no	97.909	yes
[Ref.: #69480]	glucose-ferment	no	91.87	no

Availability in culture collections External links

[Ref.: #12230]

Culture collection no.

DSM 44998, CIP 109583, KCTC 19146, JCM 16018

[Ref.: #77923]

SI-ID 297263

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mycobacterium seoulense sp. nov., a slowly growing scotochromogenic species.	Mun HS, Kim HJ, Oh EJ, Kim H, Bai GH, Yu HK, Park YG, Cha CY, Kook YH, Kim BJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64744-0	2007	*

References

#12230

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44998

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31977

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28232 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77923

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297263.1 )

#122562 Collection of Institut Pasteur ; Curators of the CIP; CIP 109583

#28232

IJSEM 594 2007 ( DOI 10.1099/ijs.0.64744-0 , PubMed 17329791 )

* These data were automatically processed and therefore are not curated

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Mycobacterium seoulense JCM 16018

Mycobacterium seoulense JCM 16018

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