Name: Mycobacterium angelicum 126/5/03
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 8539

Type strain:

Species: Mycobacterium angelicum

Strain Designation: 126/5/03

Culture col. no.: DSM 45057, CIP 109313

Strain history: CIP <- 2006, F. Pourahmad, Stirling Univ., Stirling, UK: strain 126/5/03

NCBI tax ID(s): 470074 (species)

SI-ID 297511

DSM 45057, CIP 109313

Special Collections

DSMZ
CIP

Section

Mycobacterium angelicum 126/5/03 is an obligate aerobe bacterium that was isolated from freshwater angelfish dermal lesions.

obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium angelicum**
	Full Scientific Name (LPSN)	Mycobacterium angelicum Pourahmad et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %91.069

[Ref.: #116381]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12302]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

[Ref.: #12302]

Culture medium growth

[Ref.: #12302]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12302]

Culture medium composition

expand / minimize

[Ref.: #41885]

Culture medium

MEDIUM 93 - for Mycobacterium avium subsp. sylvaticum

[Ref.: #41885]

Culture medium growth

[Ref.: #41885]

Culture medium composition

expand / minimize

[Ref.: #116381]

Culture medium

CIP Medium 93

[Ref.: #116381]

Culture medium growth

[Ref.: #116381]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #12302]			growth	28 °C
[Ref.: #41885]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #116381]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %90

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #116381]		nitrate ChEBI	+	reduction
[Ref.: #116381]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #116381]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	+	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116381]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116381]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #116381]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116381]	11784	-	+	+	+	+	+	-	+	-	-	+	+	-	-	-	+	+	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12302]	Sample type/isolated from	freshwater angelfish (Pterophyllum scalare) dermal lesions
[Ref.: #12302]	Host species	Pterophyllum scalare
[Ref.: #12302]	Geographic location (country and/or sea, region)	Ljubljana
[Ref.: #12302]	Country	Slovenia
[Ref.: #12302]	Country ISO 3 Code	SVN
[Ref.: #12302]	Continent	Europe

[Ref.: #116381]	Sample type/isolated from	Animal, Fish, external lesion
[Ref.: #116381]	Country	Slovenia
[Ref.: #116381]	Country ISO 3 Code	SVN
[Ref.: #116381]	Continent	Europe
[Ref.: #116381]	Isolation date	2003
* marker position based on {}

Isolation sources categories

#Host	#Fishes	-
#Host Body-Site	#Other	#Wound
#Host Body-Site	#Organ	#Skin, Nail, Hair

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM884328 (>99% sequence identity) for Mycobacterium from Microbeatlas

Aquatic Samples	382
Soil Samples	881
Animal Samples	203
Plant Samples	54
Total Samples	1520

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #116381]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12302]	Mycobacterium angelicum partial 16S rRNA gene, type strain DSM 45057T	AM884328	1510	GenBank ENA	470074 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycobacterium angelicum DSM 45057	GCA_002086155	contig	GenBank ENA	470074 tax ID	*
[Ref.: #66792]	Mycobacterium angelicum strain DSM 45057	470074.3	wgs	PATRIC	470074 tax ID	*
[Ref.: #66792]	Mycobacterium angelicum DSM 45057	2865506402	draft	JGI IMG/M	470074 tax ID	*
[Ref.: #66792]	Mycobacterium angelicum DSM 45057	GCA_025822405	scaffold	GenBank ENA	470074 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mycobacterium angelicum strain DSM 45057 PATRIC: 470074.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	90	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycobacterium angelicum strain DSM 45057 PATRIC: 470074.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.069	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.6	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	59.228	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	91.9	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	80.439	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	86	no

Availability in culture collections External links

[Ref.: #12302]

Culture collection no.

DSM 45057, CIP 109313

[Ref.: #77925]

SI-ID 297511

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mycobacterium angelicum sp. nov., a non-chromogenic, slow-growing species isolated from fish and related to Mycobacterium szulgai.	Pourahmad F, Pate M, Ocepek M, Borroni E, Cabibbe AM, Capitolo E, Cittaro D, Frizzera E, Jencic V, Mariottini A, Marumo K, Vaggelli G, Cirillo DM, Tortoli E	Int J Syst Evol Microbiol	10.1099/ijsem.0.000642	2015	*

References

#12302

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45057

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#41885 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77925

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297511.1 )

#116381 Collection of Institut Pasteur ; Curators of the CIP; CIP 109313
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Mycobacterium angelicum in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Mycobacterium angelicum strain DSM 45057

Mycobacterium angelicum strain DSM 45057

Change proposal

Change proposal