Strain identifier

BacDive ID: 8539

Type strain: Yes

Species: Mycobacterium angelicum

Strain Designation: 126/5/03

Strain history: CIP <- 2006, F. Pourahmad, Stirling Univ., Stirling, UK: strain 126/5/03

NCBI tax ID(s): 470074 (species)

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General

@ref: 12302

BacDive-ID: 8539

DSM-Number: 45057

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe

description: Mycobacterium angelicum 126/5/03 is an obligate aerobe bacterium that was isolated from freshwater angelfish dermal lesions.

NCBI tax id

  • NCBI tax id: 470074
  • Matching level: species

strain history

@refhistory
12302<- F. Pourahmad, Scotland; 126/5/03 <- M. Ocepec
418852006, F. Pourahmad, Stirling Univ., Stirling, UK: strain 126/5/03
116381CIP <- 2006, F. Pourahmad, Stirling Univ., Stirling, UK: strain 126/5/03

doi: 10.13145/bacdive8539.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium angelicum
  • full scientific name: Mycobacterium angelicum Pourahmad et al. 2015

@ref: 12302

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium angelicum

full scientific name: Mycobacterium angelicum Pourahmad et al. 2015

strain designation: 126/5/03

type strain: yes

Morphology

cell morphology

@refmotilitygram stainconfidence
116381no
69480positive91.069

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
12302MIDDLEBROOK MEDIUM (DSMZ Medium 645)yeshttps://mediadive.dsmz.de/medium/645Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
41885MEDIUM 93 - for Mycobacterium avium subsp. sylvaticumyesDistilled water make up to (900.000 ml);Glycerol (4.500 ml);Middlebrook7H10 agar (17.000 g);Middelbrook OADC enrichment (100.000 ml)
116381CIP Medium 93yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=93

culture temp

@refgrowthtypetemperature
12302positivegrowth28
41885positivegrowth30

Physiology and metabolism

oxygen tolerance

  • @ref: 116381
  • oxygen tolerance: obligate aerobe

spore formation

  • @ref: 69481
  • spore formation: no
  • confidence: 90

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11638117632nitrate+reduction
11638116301nitrite-reduction

metabolite production

  • @ref: 116381
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
116381oxidase-
116381catalase+1.11.1.6
116381urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase+3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116381-+++++-+--++---++--+

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentisolation date
12302freshwater angelfish (Pterophyllum scalare) dermal lesionsPterophyllum scalareLjubljanaSloveniaSVNEurope
116381Animal, Fish, external lesionSloveniaSVNEurope2003

isolation source categories

Cat1Cat2Cat3
#Host#Fishes
#Host Body-Site#Other#Wound
#Host Body-Site#Organ#Skin, Nail, Hair

taxonmaps

  • @ref: 69479
  • File name: preview.99_75.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_37;97_39;98_43;99_75&stattab=map
  • Last taxonomy: Mycobacterium
  • 16S sequence: AM884328
  • Sequence Identity:
  • Total samples: 1520
  • soil counts: 881
  • aquatic counts: 382
  • animal counts: 203
  • plant counts: 54

Safety information

risk assessment

  • @ref: 116381
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 12302
  • description: Mycobacterium angelicum partial 16S rRNA gene, type strain DSM 45057T
  • accession: AM884328
  • length: 1510
  • database: nuccore
  • NCBI tax ID: 470074

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycobacterium angelicum DSM 45057GCA_002086155contigncbi470074
66792Mycobacterium angelicum strain DSM 45057470074.3wgspatric470074
66792Mycobacterium angelicum DSM 450572865506402draftimg470074
66792Mycobacterium angelicum DSM 45057GCA_025822405scaffoldncbi470074

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno90no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes91.069no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no96.6yes
69480spore-formingspore-formingAbility to form endo- or exosporesno59.228no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno91.9no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes80.439yes
69480flagellatedmotile2+Ability to perform flagellated movementno86no

External links

@ref: 12302

culture collection no.: DSM 45057, CIP 109313

straininfo link

  • @ref: 77925
  • straininfo: 297511

literature

  • topic: Phylogeny
  • Pubmed-ID: 26420689
  • title: Mycobacterium angelicum sp. nov., a non-chromogenic, slow-growing species isolated from fish and related to Mycobacterium szulgai.
  • authors: Pourahmad F, Pate M, Ocepek M, Borroni E, Cabibbe AM, Capitolo E, Cittaro D, Frizzera E, Jencic V, Mariottini A, Marumo K, Vaggelli G, Cirillo DM, Tortoli E
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000642
  • year: 2015
  • mesh: Animals, Bacterial Typing Techniques, Cichlids/*microbiology, DNA, Bacterial/genetics, Fresh Water, Japan, Molecular Sequence Data, Mycobacterium/*classification/genetics/isolation & purification, Nontuberculous Mycobacteria, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
12302Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45057)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45057
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
41885Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
77925Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID297511.1StrainInfo: A central database for resolving microbial strain identifiers
116381Curators of the CIPCollection of Institut Pasteur (CIP 109313)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109313