Mycobacterium neoaurum 3503 is an aerobe, Gram-positive bacterium that was isolated from soil.
Gram-positive aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Mycobacteriales |
| Family Mycobacteriaceae |
| Genus Mycobacterium |
| Species Mycobacterium neoaurum |
| Full scientific name Mycobacterium neoaurum Tsukamura 1972 (Approved Lists 1980) |
| Synonyms (1) |
| BacDive ID | Other strains from Mycobacterium neoaurum (7) | Type strain |
|---|---|---|
| 8329 | M. neoaurum DSM 2967, NRRL B-3805 | |
| 8359 | M. neoaurum MCI-0617, DSM 1381 | |
| 8375 | M. neoaurum 309, DSM 43536, ATCC 23072, ATCC 25790, NCTC ... | |
| 8434 | M. neoaurum SJ-7, Tomida, DSM 43993, ATCC 23069, NCTC ... | |
| 150152 | M. neoaurum CCUG 39117 | |
| 152569 | M. neoaurum CCUG 47071 | |
| 154416 | M. neoaurum CCUG 53478 |
| @ref: | 11473 |
| multimedia content: | DSM_44074.jpg |
| multimedia.multimedia content: | https://www.dsmz.de/microorganisms/photos/DSM_44074.jpg |
| caption: | Medium 645 37°C |
| intellectual property rights: | © Leibniz-Institut DSMZ |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 11473 | MIDDLEBROOK MEDIUM (DSMZ Medium 645) | Medium recipe at MediaDive | Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water | ||
| 19995 | MB7H10 | Name: Middlebrook 7H10 (MB7H10) Broth Base Composition: amount in percent Middlebrook 7H10 Agar 1.9% Glycerol 0.5% OADC-Enrichment in ml (NL5633) 10ml Comments: Add broth base and glycerol to ddh2O. Adjust volumes. Autoclave. Cool to 42°C. Add OADC-stock. Sterilisation: 20 minutes Temperature:121°C PH before: PH after: Biological details Culture type: suitable for: Mycobacteria OADC stock solution old broth-name: OADC-Stock Composition: Bovine Serum Albumin, fraction V 5 % 1% Oleic Acid in 0.2N NaOH 5ml Glucose 2 % NaCl 0.85 % Comments: Melt 1% Oleic Acid in 65°C water bath. Dissolve all ingredients in 700ml of ddH2O. Adjust volume to 1L. Filter sterilize and store at 4°C. -To make 1% Oleic Acid in 0.2N NaOH: Dissolve 5g oleic acid (ampule) in 500ml 0.2N NaOH (300ml ddH2O + 20ml NaOH + adjust volume to 500ml). Heat solution to 55°C for oleic acid to melt. Store at -20°C in 50ml aliquots. There is no need to sterilize this. Sterilisation: 20 minutes Temperature:121°C PH before: PH after: Biological details Culture type: suitable for: Mycobacteria | |||
| 19995 | MB7H11 | Name: Middlebrook 7H11 (MB7H11) Broth Base Composition: Middlebrook 7H11 Agar 2% Glycerol 0.5% OADC-Enrichment 10ml Comments: Add broth base and glycerol to ddH2O. Adjust volumes. Autoclave. Cool to 42°C. Add OADC-Stock. Sterilisation: 20 minutes Temperature:121°C PH before: PH after: Biological details Culture type: suitable for: Mycobacteria OADC stock solution old broth-name: OADC-Stock Composition: Bovine Serum Albumin, fraction V 5 % 1% Oleic Acid in 0.2N NaOH 5ml Glucose 2 % NaCl 0.85 % Comments: Melt 1% Oleic Acid in 65°C water bath. Dissolve all ingredients in 700ml of ddH2O. Adjust volume to 1L. Filter sterilize and store at 4°C. -To make 1% Oleic Acid in 0.2N NaOH: Dissolve 5g oleic acid (ampule) in 500ml 0.2N NaOH (300ml ddH2O + 20ml NaOH + adjust volume to 500ml). Heat solution to 55°C for oleic acid to melt. Store at -20°C in 50ml aliquots. There is no need to sterilize this. Sterilisation: 20 minutes Temperature:121°C PH before: PH after: Biological details Culture type: suitable for: Mycobacteria | |||
| 19995 | 5006 | Medium: 5006 Name: Composition (g/l) Sucrose 3,0 Dextrin 15,0 Meat extract 1,0 Yeast extract 2,0 Tryptone soy broth (Oxoid) 5,0 NaCl 0,5 K2HPO4 0,5 MgSO4 x 7 H2O 0,5 FeSO4 x 7 H2O 0,01 Agar 20,0 Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7,3 Usage: Maintenance Organisms: All Actinomycetes | |||
| 36383 | MEDIUM 55 - for Mycobacterium | ||||
| 121265 | CIP Medium 55 | Medium recipe at CIP |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68379 | 17634 ChEBI | D-glucose | - | fermentation | from API Coryne |
| 68379 | 16899 ChEBI | D-mannitol | - | fermentation | from API Coryne |
| 68379 | 16988 ChEBI | D-ribose | - | fermentation | from API Coryne |
| 68379 | 65327 ChEBI | D-xylose | - | fermentation | from API Coryne |
| 68379 | 5291 ChEBI | gelatin | - | hydrolysis | from API Coryne |
| 68379 | 28087 ChEBI | glycogen | - | fermentation | from API Coryne |
| 121265 | 606565 ChEBI | hippurate | - | hydrolysis | |
| 68379 | 17716 ChEBI | lactose | - | fermentation | from API Coryne |
| 68379 | 17306 ChEBI | maltose | - | fermentation | from API Coryne |
| 121265 | 17632 ChEBI | nitrate | + | reduction | |
| 121265 | 17632 ChEBI | nitrate | - | respiration | |
| 121265 | 16301 ChEBI | nitrite | - | reduction | |
| 68379 | 17992 ChEBI | sucrose | - | fermentation | from API Coryne |
| 68379 | 16199 ChEBI | urea | + | hydrolysis | from API Coryne |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 121265 | amylase | - | ||
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 121265 | beta-galactosidase | - | 3.2.1.23 | |
| 68379 | beta-galactosidase | - | 3.2.1.23 | from API Coryne |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68379 | beta-glucuronidase | - | 3.2.1.31 | from API Coryne |
| 121265 | caseinase | - | 3.4.21.50 | |
| 121265 | catalase | + | 1.11.1.6 | |
| 68379 | catalase | + | 1.11.1.6 | from API Coryne |
| 121265 | DNase | - | ||
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 121265 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 121265 | gelatinase | - | ||
| 68379 | gelatinase | - | from API Coryne | |
| 121265 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 121265 | lipase | - | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API Coryne |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 121265 | oxidase | - | ||
| 121265 | protease | - | ||
| 68379 | pyrazinamidase | + | 3.5.1.B15 | from API Coryne |
| 68379 | pyrrolidonyl arylamidase | + | 3.4.19.3 | from API Coryne |
| 121265 | tween esterase | + | ||
| 121265 | urease | + | 3.5.1.5 | |
| 68379 | urease | + | 3.5.1.5 | from API Coryne |
| @ref | Control | Alkaline phosphatase | Esterase (C 4) | 2-naphtyl caprylateEsterase Lipase (C 8) | Lipase (C 14) | L-leucyl-2-naphthylamideLeucine arylamidase | L-valyl-2-naphthylamideValine arylamidase | L-cystyl-2-naphthylamideCystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19995 | not determinedn.d. | - | + | + | - | + | - | - | + | - | + | + | - | - | - | + | - | - | + | - | |
| 53793 | - | - | - | + | - | + | + | + | + | - | + | + | - | - | - | - | + | - | - | - | |
| 121265 | - | - | + | + | - | + | - | + | - | - | + | + | - | - | - | - | - | - | - | - |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | ASM567060v1 assembly for Mycolicibacterium neoaurum DSM 44074 | scaffold | 1795 | 71.39 | ||||
| 67770 | ATCC25795_good_1 (paired) assembly for Mycolicibacterium neoaurum ATCC 25795 | contig | 1265312 | 70.75 | ||||
| 67770 | PRJEB1060_assembly_1 assembly for Mycolicibacterium neoaurum DSM 44074 | scaffold | 1795 | 68.98 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Mycobacterium neoaurum 16S ribosomal RNA gene, partial sequence | AF480593 | 1470 | 1265312 | ||
| 20218 | Mycobacterium neoaurum strain ATCC 25795 16S ribosomal RNA gene, partial sequence | FJ172306 | 1451 | 1265312 | ||
| 20218 | Mycolicibacterium neoaurum 16S ribosomal RNA, complete sequence | M29564 | 1354 | 1795 | ||
| 20218 | Mycobacterium neoaurum BCRC:17230 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | HM584726 | 272 | 1795 | ||
| 20218 | Mycobacterium neoaurum strain CIP 105387 16S ribosomal RNA gene, partial sequence | AF547951 | 540 | 1265312 | ||
| 124043 | Mycolicibacterium neoaurum strain ATCC 25795(T) 16S ribosomal RNA gene, partial sequence. | MN686688 | 493 | 1795 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 94.90 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 85.30 | no |
| 125439 | motility | BacteriaNetⓘ | no | 54.30 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 74.10 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 90.30 | yes |
| 125438 | anaerobic | anaerobicⓘ | no | 98.43 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 59.10 | no |
| 125438 | aerobic | aerobicⓘ | yes | 90.18 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 96.50 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 87.00 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Efficient Production of 9,22-Dihydroxy-23,24-bisnorchol-4-ene-3-one from Phytosterols by Modifying Multiple Genes in Mycobacterium fortuitum. | Han S, Liu X, He B, Zhai X, Yuan C, Li Y, Lin W, Wang H, Zhang B. | Int J Mol Sci | 10.3390/ijms25073579 | 2024 | ||
| Draft Genome Sequence of Mycobacterium acapulcensis Strain CSURP1424. | Asmar S, Rascovan N, Robert C, Drancourt M. | Genome Announc | 10.1128/genomea.00836-16 | 2016 | ||
| Genetics | Comparative genomics of Mycobacterium mucogenicum and Mycobacterium neoaurum clade members emphasizing tRNA and non-coding RNA. | Behra PRK, Pettersson BMF, Das S, Dasgupta S, Kirsebom LA. | BMC Evol Biol | 10.1186/s12862-019-1447-7 | 2019 | |
| Enzymology | Loop pathways are responsible for tuning the accumulation of C19- and C22-sterol intermediates in the mycobacterial phytosterol degradation pathway. | Song S, He J, Gao M, Huang Y, Cheng X, Su Z. | Microb Cell Fact | 10.1186/s12934-022-02008-8 | 2023 | |
| A novel real-time PCR assay for specific detection and quantification of Mycobacterium avium subsp. paratuberculosis in milk with the inherent possibility of differentiation between viable and dead cells. | Dzieciol M, Volgger P, Khol J, Baumgartner W, Wagner M, Hein I. | BMC Res Notes | 10.1186/1756-0500-3-251 | 2010 | ||
| Phylogeny | Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera. | Gupta RS, Lo B, Son J. | Front Microbiol | 10.3389/fmicb.2018.00067 | 2018 | |
| Genetics | Whole-Genome Analysis of Mycobacterium neoaurum DSM 1381 and the Validation of Two Key Enzymes Affecting C22 Steroid Intermediates in Sterol Metabolism. | Zhang J, Zhang R, Song S, Su Z, Shi J, Cao H, Zhang B. | Int J Mol Sci | 10.3390/ijms24076148 | 2023 | |
| Enzymology | Efficient Synthesis of Steroidal Intermediates with a C17 Side Chain from Phytosterols by Genetically Modified Mycolicibacterium neoaurum NRRL B-3805 Strain. | Li X, Zhu L, Wu Q, Zhang R, Liu Y, Liu N, Feng J, Wu Q, Zhu D. | ChemistryOpen | 10.1002/open.202500086 | 2025 | |
| Metabolism | Efficient conversion of phytosterols into 4-androstene-3,17-dione and its C1,2-dehydrogenized and 9alpha-hydroxylated derivatives by engineered Mycobacteria. | Li X, Chen T, Peng F, Song S, Yu J, Sidoine DN, Cheng X, Huang Y, He Y, Su Z. | Microb Cell Fact | 10.1186/s12934-021-01653-9 | 2021 | |
| Rational development of mycobacteria cell factory for advancing the steroid biomanufacturing. | Wang XX, Ke X, Liu ZQ, Zheng YG. | World J Microbiol Biotechnol | 10.1007/s11274-022-03369-3 | 2022 | ||
| Biosynthesis and Industrial Production of Androsteroids. | Batth R, Nicolle C, Cuciurean IS, Simonsen HT. | Plants (Basel) | 10.3390/plants9091144 | 2020 | ||
| Rerouting phytosterol degradation pathway for directed androst-1,4-diene-3,17-dione microbial bioconversion. | Ke X, Cui JH, Ren QJ, Zheng T, Wang XX, Liu ZQ, Zheng YG. | Appl Microbiol Biotechnol | 10.1007/s00253-023-12847-z | 2024 | ||
| Chemo-Enzymatic Strategy for the Efficient Synthesis of Steroidal Drugs with 10alpha-Methyl Group and a Side Chain at C17-Position from Biorenewable Phytosterols. | Li X, Zhang R, Li J, Liu N, Chen X, Liu Y, Zhao G, Ding K, Yao P, Feng J, Wu Q, Zhu D, Ma Y. | JACS Au | 10.1021/jacsau.3c00688 | 2024 | ||
| Enzymology | Whole-genome and enzymatic analyses of an androstenedione-producing Mycobacterium strain with residual phytosterol-degrading pathways. | Wang H, Song S, Peng F, Yang F, Chen T, Li X, Cheng X, He Y, Huang Y, Su Z. | Microb Cell Fact | 10.1186/s12934-020-01442-w | 2020 | |
| Biotechnology | New Insights into the Modification of the Non-Core Metabolic Pathway of Steroids in Mycolicibacterium and the Application of Fermentation Biotechnology in C-19 Steroid Production. | Zhang Y, Xiao P, Pan D, Zhou X. | Int J Mol Sci | 10.3390/ijms24065236 | 2023 | |
| In Vitro Antimicrobial Activities of Tigecycline, Eravacycline, Omadacycline, and Sarecycline against Rapidly Growing Mycobacteria. | Zhang T, Du J, Dong L, Wang F, Zhao L, Jia J, Wang C, Cheng M, Yu X, Huang H. | Microbiol Spectr | 10.1128/spectrum.03238-22 | 2023 | ||
| In vitro and intracellular inhibitory activities of nosiheptide against Mycobacterium abscessus. | Zhu R, Yu X, Zhang T, Kong Y, Wang F, Jia J, Xue Y, Huang H. | Front Microbiol | 10.3389/fmicb.2022.926361 | 2022 | ||
| Transcriptome | Genome-wide response on phytosterol in 9-hydroxyandrostenedione-producing strain of Mycobacterium sp. VKM Ac-1817D. | Bragin EY, Shtratnikova VY, Schelkunov MI, Dovbnya DV, Donova MV. | BMC Biotechnol | 10.1186/s12896-019-0533-7 | 2019 | |
| Enzymology | Bioproduction of testosterone from phytosterol by Mycolicibacterium neoaurum strains: "one-pot", two modes. | Tekucheva DN, Nikolayeva VM, Karpov MV, Timakova TA, Shutov AV, Donova MV. | Bioresour Bioprocess | 10.1186/s40643-022-00602-7 | 2022 | |
| Customized exogenous ferredoxin functions as an efficient electron carrier. | Song Z, Wei C, Li C, Gao X, Mao S, Lu F, Qin HM. | Bioresour Bioprocess | 10.1186/s40643-021-00464-5 | 2021 | ||
| Pathogenicity | In Vitro Activities of Bedaquiline and Delamanid against Nontuberculous Mycobacteria Isolated in Beijing, China. | Yu X, Gao X, Li C, Luo J, Wen S, Zhang T, Ma Y, Dong L, Wang F, Huang H. | Antimicrob Agents Chemother | 10.1128/aac.00031-19 | 2019 | |
| Application of Threonine Aldolases for the Asymmetric Synthesis of alpha-Quaternary alpha-Amino Acids. | Blesl J, Trobe M, Anderl F, Breinbauer R, Strohmeier GA, Fesko K. | ChemCatChem | 10.1002/cctc.201800611 | 2018 | ||
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| Compilation of small ribosomal subunit RNA structures. | Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R. | Nucleic Acids Res | 10.1093/nar/21.13.3025 | 1993 | ||
| Bloodstream Infection Caused by Mycobacterium neoaurum in a Primary Central Nervous System Lymphoma Patient with Toxic Epidermal Necrolysis: A Case Report. | Hakamata M, Ogata H, Kanno N, Suzuki A, Yamagishi I, Sato K, Ui M, Tsuruma H, Bamba Y, Shibata S, Cho H, Sato M, Aoki N, Moro H, Kikuchi T. | Intern Med | 10.2169/internalmedicine.5633-25 | 2025 | ||
| Mycobacterium neoaurum Bacteremia in an Immunocompetent Patient in MICU: The First Reported Case in Qatar. | Alshmarri A, Jassim N, Elhiday H, Alqudah B. | Case Rep Infect Dis | 10.1155/crdi/3710417 | 2025 | ||
| Enzymology | Construction of a Cell Factory for the Targeted and Efficient Production of Phytosterol to Boldenone in Mycobacterium neoaurum. | Zhang B, Zhu S, Zhu Y, Sui X, Zhou J, Liu Z, Zheng Y. | Biotechnol J | 10.1002/biot.202400489 | 2024 | |
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| Structure-guided engineering an (R)-transaminase from Mycobacterium neoaurum for efficient synthesis of chiral N-heterocyclic amines. | Gao X, Zhang W, Wei X, Zhao L, Che C, Zhang Z, Wei H, Qin B, Liu W, Jia X, You S. | Int J Biol Macromol | 10.1016/j.ijbiomac.2024.138591 | 2025 | ||
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| Obtaining of 24-Norchol-4-ene-3,22-dione from Phytosterol with Mutants of Mycolicibacterium neoaurum. | Dovbnya DV, Ivashina TV, Khomutov SM, Shutov AA, Deshcherevskaya NO, Donova MV. | Methods Mol Biol | 10.1007/978-1-0716-3385-4_18 | 2023 | ||
| Enzymology | 3beta-Hydroxysteroid dehydrogenase expressed by gut microbes degrades testosterone and is linked to depression in males. | Li D, Liu R, Wang M, Peng R, Fu S, Fu A, Le J, Yao Q, Yuan T, Chi H, Mu X, Sun T, Liu H, Yan P, Wang S, Cheng S, Deng Z, Liu Z, Wang G, Li Y, Liu T. | Cell Host Microbe | 10.1016/j.chom.2022.01.001 | 2022 | |
| Demulsification of Bacteria-Stabilized Pickering Emulsions Using Modified Silica Nanoparticles. | Xie H, Zhao W, Zhang X, Wang Z. | ACS Appl Mater Interfaces | 10.1021/acsami.2c02526 | 2022 | ||
| Pin tract infection caused by Mycobacterium neoaurum in a 14-year-old child: A case report. | Kusano T, Fukasawa C, Yamamoto S, Shiratori E, Murata S, Takaki A, Chikamatsu K, Mitarai S, Hoshino T. | J Infect Chemother | 10.1016/j.jiac.2021.03.005 | 2021 | ||
| Case report: Mycobacterium neoaurum infection during ICI therapy in a hepatocellular carcinoma patient with psoriasis. | Pang L, Chen Z, Xu D, Cheng W. | Front Immunol | 10.3389/fimmu.2022.972302 | 2022 | ||
| Metabolism | Identification of bottlenecks in 4-androstene-3,17-dione/1,4-androstadiene-3,17-dione synthesis by Mycobacterium neoaurum JC-12 through comparative proteomics. | Liu C, Shao M, Osire T, Xu Z, Rao Z. | J Biosci Bioeng | 10.1016/j.jbiosc.2020.10.006 | 2021 | |
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| Metabolism | Production of 9,21-dihydroxy-20-methyl-pregna-4-en-3-one from phytosterols in Mycobacterium neoaurum by modifying multiple genes and improving the intracellular environment. | Yuan CY, Ma ZG, Zhang JX, Liu XC, Du GL, Sun JS, Shi JP, Zhang BG | Microb Cell Fact | 10.1186/s12934-021-01717-w | 2021 | |
| CRISPR-Cas12a assisted precise genome editing of Mycolicibacterium neoaurum. | Liu K, Gao Y, Li ZH, Liu M, Wang FQ, Wei DZ | N Biotechnol | 10.1016/j.nbt.2021.10.003 | 2021 | ||
| Metabolism | Enhancing the bioconversion of phytosterols to steroidal intermediates by the deficiency of kasB in the cell wall synthesis of Mycobacterium neoaurum. | Xiong LB, Liu HH, Zhao M, Liu YJ, Song L, Xie ZY, Xu YX, Wang FQ, Wei DZ | Microb Cell Fact | 10.1186/s12934-020-01335-y | 2020 | |
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| Metabolism | Mycobacterium fluoranthenivorans sp. nov., a fluoranthene and aflatoxin B1 degrading bacterium from contaminated soil of a former coal gas plant. | Hormisch D, Brost I, Kohring GW, Giffhorn F, Kroppenstedt RM, Stackebrandt E, Farber P, Holzapfel WH. | Syst Appl Microbiol | 10.1078/0723202042369866 | 2004 | |
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| Phylogeny | Mycobacterium hodleri sp. nov., a new member of the fast-growing mycobacteria capable of degrading polycyclic aromatic hydrocarbons. | Kleespies M, Kroppenstedt RM, Rainey FA, Webb LE, Stackebrandt E. | Int J Syst Bacteriol | 10.1099/00207713-46-3-683 | 1996 | |
| Enzymology | Mycobacterium terramassiliense, Mycobacterium rhizamassiliense and Mycobacterium numidiamassiliense sp. nov., three new Mycobacterium simiae complex species cultured from plant roots. | Bouam A, Armstrong N, Levasseur A, Drancourt M. | Sci Rep | 10.1038/s41598-018-27629-1 | 2018 | |
| Phylogeny | Mycobacterium sediminis sp. nov. and Mycobacterium arabiense sp. nov., two rapidly growing members of the genus Mycobacterium. | Zhang DF, Chen X, Zhang XM, Zhi XY, Yao JC, Jiang Y, Xiong Z, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.050567-0 | 2013 |
| #11473 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44074 |
| #19995 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #36383 | ; Curators of the CIP; |
| #53793 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 37665 |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #67771 | Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC; |
| #68379 | Automatically annotated from API Coryne . |
| #68382 | Automatically annotated from API zym . |
| #121265 | Collection of Institut Pasteur ; Curators of the CIP; CIP 105387 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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