Name: Mycobacterium parakoreense 299
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 8348

Type strain:

Species: Mycobacterium parakoreense

Strain Designation: 299

Culture col. no.: DSM 45575, KCTC 19818

Strain history: <- BJ Kim, Seoul Natl. Univ. <- KIT(Korea Institute of Tuberculosis)

NCBI tax ID(s): 1069221 (species)

SI-ID 403412

DSM 45575

Special Collections

Section

Mycobacterium parakoreense 299 is an aerobe, ovoid-shaped bacterium that was isolated from sputum of a patient with a symptomatic pulmonary infection.

ovoid-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium parakoreense**
	Full Scientific Name (LPSN)	Mycobacterium parakoreense Kim et al. 2013

Synonym

Mycolicibacillus parakoreensis

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %90.145

[Ref.: #30813]	Cell shape	ovoid-shaped

[Ref.: #69480]	Motility	no Confidence in %93

[Ref.: #30813]

Pigment production

yes

Multimedia content

[Ref.: #17667]

Caption:

Medium 645 37°C

[Ref.: #17667]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17667]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

[Ref.: #17667]

Culture medium growth

[Ref.: #17667]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17667]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17667]	growth	37 °C
[Ref.: #30813]	growth	26-44 °C
[Ref.: #30813]	optimum	37 °C
[Ref.: #67771]	growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30813]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #30813]

Ability of spore formation

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30813]		nitrate ChEBI	+	reduction

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30813]		catalase	+	1.11.1.6
[Ref.: #30813]		pyrazinamidase	+	3.5.1.B15

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17667]	Sample type/isolated from	sputum of a patient with a symptomatic pulmonary infection
[Ref.: #17667]	Geographic location (country and/or sea, region)	Seoul
[Ref.: #17667]	Country	Republic of Korea
[Ref.: #17667]	Country ISO 3 Code	KOR
[Ref.: #17667]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	sputum of a patient with a symptomatic pulmonary infection
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Infection	#Patient	-
#Host Body-Site	#Oral cavity and airways	#Airways
#Host Body Product	#Fluids	#Sputum

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17667]	Mycobacterium parakoreense strain 299 16S ribosomal RNA gene, complete sequence	JF271823	1465	GenBank ENA	1069221 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycolicibacillus parakoreensis DSM 45575	GCA_022370835	complete	GenBank ENA	1069221 tax ID	*
[Ref.: #66792]	Mycolicibacillus parakoreensis DSM 45575	GCA_025822825	scaffold	GenBank ENA	1069221 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycolicibacillus parakoreensis DSM 45575 NCBI: GCA_022370835.2
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.145	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.063	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	80.837	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	71.695	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.422	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	93	no

Availability in culture collections External links

[Ref.: #17667]

Culture collection no.

DSM 45575, KCTC 19818

[Ref.: #77750]

SI-ID 403412

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mycobacterium parakoreense sp. nov., a slowly growing non-chromogenic species related to Mycobacterium koreense, isolated from a human clinical specimen.	Kim BJ, Hong SH, Yu HK, Park YG, Jeong J, Lee SH, Kim SR, Kim K, Kook YH, Kim BJ	Int J Syst Evol Microbiol	10.1099/ijs.0.045070-0	2012	*

References

#17667

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45575

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30813

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27144 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#77750

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403412.1 )

#27144

IJSEM 2301 2013 ( DOI 10.1099/ijs.0.045070-0 , PubMed 23159753 )

* These data were automatically processed and therefore are not curated

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Mycolicibacillus parakoreensis DSM 45575

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