Name: Mycobacterium engbaekii Copenhagen 20538
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 8349

Type strain:

Species: Mycobacterium engbaekii

Strain Designation: Copenhagen 20538, Eng 1

Culture col. no.: DSM 45694, ATCC 27353

Strain history: <- ATCC; ATCC 27353 <- T. Korsak <- H. Boisvert <- Copenhagen, Denmark 20538

NCBI tax ID(s): 188915 (species)

SI-ID 38954

ATCC 27353, DSM 45694, CCUG 75235

Special Collections

Section

Mycobacterium engbaekii Copenhagen 20538 is a coccus-shaped human pathogen of the family Mycobacteriaceae.

coccus-shaped
human pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium engbaekii**
	Full Scientific Name (LPSN)	Mycobacterium engbaekii Tortoli et al. 2013

Synonym

Mycolicibacter engbaekii

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %91.63

[Ref.: #30561]	Cell shape	coccus-shaped

[Ref.: #69480]	Motility	no Confidence in %91.375

[Ref.: #30561]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18059]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

[Ref.: #18059]

Culture medium growth

[Ref.: #18059]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18059]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #18059]	growth	37 °C
[Ref.: #30561]	growth	25-37 °C
[Ref.: #30561]	optimum	31 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30561]

Ability of spore formation

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30561]		tween 80 ChEBI	+	carbon source

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18059]	Pathogenicity (human)	yes, in single cases
[Ref.: #18059]	Pathogenicity (animal)	yes, in single cases
[Ref.: #18059]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18059]	Mycobacterium engbaekii 16S ribosomal RNA gene, partial sequence	AF480577	1468	GenBank ENA	188915 tax ID
[Ref.: #20218]	Mycobacterium engbaekii strain ATCC 27353 16S ribosomal RNA gene, partial sequence	JN571172	479	GenBank ENA	188915 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycolicibacter engbaekii ATCC 27353	GCA_002101585	contig	GenBank ENA	188915 tax ID	*
[Ref.: #66792]	Mycobacterium engbaekii strain ATCC 27353	188915.3	wgs	PATRIC	188915 tax ID	*
[Ref.: #66792]	Mycolicibacter engbaekii ATCC 27353	2865367387	draft	JGI IMG/M	188915 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mycobacterium engbaekii strain ATCC 27353 PATRIC: 188915.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	86	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycobacterium engbaekii strain ATCC 27353 PATRIC: 188915.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.63	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.589	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	67.611	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	84.507	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.9	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	91.375	no

Availability in culture collections External links

[Ref.: #18059]

Culture collection no.

DSM 45694, ATCC 27353

[Ref.: #77751]

SI-ID 38954

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Survey of 150 strains belonging to the Mycobacterium terrae complex and description of Mycobacterium engbaekii sp. nov., Mycobacterium heraklionense sp. nov. and Mycobacterium longobardum sp. nov.	Tortoli E, Gitti Z, Klenk HP, Lauria S, Mannino R, Mantegani P, Mariottini A, Neonakis I	Int J Syst Evol Microbiol	10.1099/ijs.0.038737-0	2012	*

References

#18059

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45694

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#30561

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26892 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#77751

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID38954.1 )

#26892

IJSEM 401 2013 ( DOI 10.1099/ijs.0.038737-0 , PubMed 22447702 )

* These data were automatically processed and therefore are not curated

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Mycobacterium engbaekii strain ATCC 27353

Mycobacterium engbaekii strain ATCC 27353

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